View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18665_low_6 (Length: 460)
Name: NF18665_low_6
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 72 - 448
Target Start/End: Complemental strand, 7727905 - 7727530
Alignment:
| Q |
72 |
tttttgttcccttctctttaatgatatattgtggtagcagccctttactccacatatacctccctagacgtcaatgtatatatggttggatgcattcaaa |
171 |
Q |
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| T |
7727905 |
tttttgttcccttctctttaatgatatattgtggtagcagccctttactccacatacacctccctagacgtcaatgtatatatggttggatgcattcaaa |
7727806 |
T |
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| Q |
172 |
gggtcttatctcattattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagtttaa |
271 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7727805 |
gggtcatatctcattattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagattaa |
7727706 |
T |
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| Q |
272 |
aaccatacttatcacccaaacttgagtactctctcaacccaaactcaaaccacctcttcataagnnnnnnnnctccaaaattaagatgaagactcctcca |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7727705 |
aaccatacttatcacccaaacttgagtactctctcaacccaaactcaaaccacctcttcataag-aaaaaaactccaaaattaagatgaagactcctcca |
7727607 |
T |
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| Q |
372 |
aacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgctgatgatgt |
448 |
Q |
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|||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
7727606 |
aacaagtttctcctactccacttaacacttctcttcctttcttccatctacttctccacatcaaatgctgatgatgt |
7727530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 184 - 448
Target Start/End: Complemental strand, 7731965 - 7731690
Alignment:
| Q |
184 |
attattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagtttaaaa-ccatactta |
282 |
Q |
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| T |
7731965 |
attattttaagcctccttgtttgaccaactttcactaaaacagatatacatcctggcgactacgaattctataaatagcaaagcttaaaattaatactaa |
7731866 |
T |
|
| Q |
283 |
tcacccaaacttgagtactctctcaacccaaa-ctcaaaccacctcttcata--------agnnnnnnnnctc-caaaattaagatgaagactcctccaa |
372 |
Q |
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||||||||||||||||||||||| ||| |||| ||||||||||||||||||| | ||| ||||||||||||||||||| |||||| |
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| T |
7731865 |
tcacccaaacttgagtactctcttaacacaaagctcaaaccacctcttcatatttttttcaactaaaaaactctcaaaattaagatgaagactactccaa |
7731766 |
T |
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| Q |
373 |
acatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgctgatgatgt |
448 |
Q |
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| T |
7731765 |
acatgtttctcctactccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgt |
7731690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 344 - 439
Target Start/End: Complemental strand, 7699766 - 7699671
Alignment:
| Q |
344 |
ctccaaaattaagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgc |
439 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
7699766 |
ctccaaaattaagatgaagacttctccaaacatgtttctcctactccacttaacacttctcttcctttcttccatctacttctccaaatcaaacgc |
7699671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 344 - 448
Target Start/End: Complemental strand, 7739952 - 7739848
Alignment:
| Q |
344 |
ctccaaaattaagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgctgat |
443 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| || |||||| |
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| T |
7739952 |
ctccaaaattaagatgaagactactccaaacaagtttctcctactccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgat |
7739853 |
T |
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| Q |
444 |
gatgt |
448 |
Q |
| |
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||||| |
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| T |
7739852 |
gatgt |
7739848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 7740106 - 7739995
Alignment:
| Q |
178 |
tatctcattattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagtttaaaaccat |
277 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||| ||| |
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| T |
7740106 |
tatctcattattttaagcctacttgtttgaccaactttcactaaaacagata--catactggctgctacgttttctataaatagcaaagcttaaaatcat |
7740009 |
T |
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| Q |
278 |
acttatcacccaaa |
291 |
Q |
| |
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|||||||||||||| |
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| T |
7740008 |
acttatcacccaaa |
7739995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 7728146 - 7728089
Alignment:
| Q |
23 |
tataggtttatcaattcctaggaggttgcgcctttatgtcccctcgttatttttgttc |
80 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7728146 |
tataggtttatcaattcctaggaggttgcggctttatgtcccctcgttatttttgttc |
7728089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 439
Target Start/End: Complemental strand, 7714102 - 7714016
Alignment:
| Q |
353 |
taagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgc |
439 |
Q |
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|||||||||||||||||||||||||||| | || ||| ||||||| ||||||||||||||||||||||||||| ||| ||||| |
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| T |
7714102 |
taagatgaagactcctccaaacatgtttatgctactcagcctaacactcttcttcctttcttccatctacttctccaaatcaaacgc |
7714016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 440
Target Start/End: Original strand, 12907694 - 12907786
Alignment:
| Q |
348 |
aaaattaagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgct |
440 |
Q |
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|||||||||||||||||| |||| ||||||||||| || ||||| |||||||| ||||||| |||| ||| |||||||| | ||| |||||| |
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| T |
12907694 |
aaaattaagatgaagacttctcctaacatgtttcttctactccagttaacactcatcttcctctctttcatatacttctctaaatcaaacgct |
12907786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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