View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18665_low_8 (Length: 395)
Name: NF18665_low_8
Description: NF18665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18665_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 95 - 371
Target Start/End: Original strand, 31363014 - 31363292
Alignment:
| Q |
95 |
atatatacacatatagcaggtatttttaatttaagtggcaagagcaagtcctcaatgcatgtaaaaacacttatcggtaagagtgacacctctcatttta |
194 |
Q |
| |
|
||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31363014 |
atatatatatatatagcatgtatttttaatttaagtggcaagagcaagtcctcaatgcatgtaaaaacacttatcggtaagagtgacacctctcggttta |
31363113 |
T |
|
| Q |
195 |
cggacgagttagacccaatataaaaacctaacaaatgtgatcgtgtattcttaactcattttaagatgatagcagcaacagttttagaatgttaaatgat |
294 |
Q |
| |
|
|||| ||||| ||| | |||||||||| ||||||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
31363114 |
cggatgagttggacacgatataaaaacataacaaatgtgattgtgtattcttaattcattttaagatgagagcaacaacagttttagaaagttaaatgat |
31363213 |
T |
|
| Q |
295 |
gaatcaccaagaaattgatgtcacaag--tatgggccagtgatgtttaaaggatgaaaatgacataggaaagaattaga |
371 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31363214 |
gaatcacgcagaaattgatgtcacaagtatatgggccagtgatgtttaaaggatgaaaatgacataggaaagacttaga |
31363292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 31362897 - 31362985
Alignment:
| Q |
16 |
atgagaatgagtgaaaggaagaaacatcgagtggatgtggccatcttatcttaaaactattaac----aagagagaagttcagatatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
31362897 |
atgagaatgagtgaaaggaagaaacattgagtggatgtggccatcttatcttaaaattattaacaaggaagagagaagttcagatatat |
31362985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 31295333 - 31295394
Alignment:
| Q |
16 |
atgagaatgagtgaaaggaagaaacatcgagtggatgtggccatcttatcttaaaactatta |
77 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||||| | ||||||||||||||||| ||||| |
|
|
| T |
31295333 |
atgagaatgaatgaaaggaagaaaaattgagtggatctagccatcttatcttaaaattatta |
31295394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University