View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18666_high_4 (Length: 350)

Name: NF18666_high_4
Description: NF18666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18666_high_4
NF18666_high_4
[»] chr6 (26 HSPs)
chr6 (19-341)||(4591997-4592319)
chr6 (140-341)||(4563598-4563799)
chr6 (19-133)||(4563452-4563567)
chr6 (228-341)||(4585608-4585724)
chr6 (251-341)||(4570970-4571060)
chr6 (244-341)||(4613762-4613859)
chr6 (249-341)||(4560502-4560594)
chr6 (249-337)||(4557121-4557209)
chr6 (250-341)||(4574305-4574396)
chr6 (242-341)||(4579421-4579520)
chr6 (253-341)||(4480693-4480781)
chr6 (244-337)||(4598162-4598255)
chr6 (253-341)||(4617022-4617110)
chr6 (253-316)||(4492955-4493018)
chr6 (234-341)||(4516302-4516409)
chr6 (89-140)||(4613968-4614019)
chr6 (259-341)||(4504441-4504523)
chr6 (253-318)||(4505857-4505922)
chr6 (253-296)||(4515210-4515253)
chr6 (150-195)||(4613888-4613933)
chr6 (253-329)||(4601789-4601865)
chr6 (259-309)||(3171747-3171797)
chr6 (259-337)||(4267214-4267292)
chr6 (259-317)||(4392094-4392152)
chr6 (249-319)||(4606957-4607027)
chr6 (253-341)||(4461123-4461211)
[»] chr8 (3 HSPs)
chr8 (242-341)||(20863887-20863986)
chr8 (253-341)||(1674226-1674314)
chr8 (222-320)||(16686332-16686432)
[»] chr5 (2 HSPs)
chr5 (253-341)||(28000143-28000231)
chr5 (259-341)||(24103005-24103087)
[»] chr3 (1 HSPs)
chr3 (253-334)||(1281114-1281195)
[»] scaffold0477 (1 HSPs)
scaffold0477 (259-341)||(4730-4812)
[»] chr7 (1 HSPs)
chr7 (259-309)||(3086426-3086476)


Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 4591997 - 4592319
Alignment:
Q  19 tcaagatactgtgaaagaattcttattccctctactttacatattaaagtggtaggattcatattataaagttaatatacatgccatataattatccaat 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4591997 tcaagataccgtgaaagaattcttattccctctactttacatattaaaatggtaggattcatattataaagttaatatacatgccatataattatccaat 4592096  T
Q  119 atgcatatattcaaaccattcagtttaggcactctagctgaagatgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgt 218  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592097 atgcatatattcaaaacattcagtttaggaactcttgctgaagatgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgt 4592196  T
Q  219 tgaactgctttgcataaaaaattacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592197 tgaactgctttgcataaaaaattacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtct 4592296  T
Q  319 cgtgctctcctccgccttcttct 341  Q
    |||| ||||||| ||||||||||    
T  4592297 cgtgttctcctctgccttcttct 4592319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 140 - 341
Target Start/End: Original strand, 4563598 - 4563799
Alignment:
Q  140 agtttaggcactctagctgaagatgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaa 239  Q
    |||| ||| ||||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||    
T  4563598 agttcaggaactcttgctgaagatgacttcacttacatcagaacttaaattcaataggggaagatcaattaattatcgttgaactgaattgcataaaaaa 4563697  T
Q  240 -ttacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttct 338  Q
     ||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| | |||||| | ||||    
T  4563698 gttacttaaa-ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttct 4563796  T
Q  339 tct 341  Q
    |||    
T  4563797 tct 4563799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 4563452 - 4563567
Alignment:
Q  19 tcaagatactgtgaaagaattcttattccctctactttacatatt-aaagtggtaggattcatattataaagttaatatacatgccatataattatccaa 117  Q
    |||||||||||||||||||||||||||| | | |||| ||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||    
T  4563452 tcaagatactgtgaaagaattcttattcacccaacttaacatatttaaacttgtaggatttatattataaagttaatatacatgccatataattatccaa 4563551  T
Q  118 tatgcatatattcaaa 133  Q
    ||||||||||||||||    
T  4563552 tatgcatatattcaaa 4563567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 4585608 - 4585724
Alignment:
Q  228 ttgcataaaaaatt-acttaaa--tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgct 324  Q
    |||||||||||||| ||||| |  ||||||||||||||||||| |||||||| |||| ||| |||||||| || ||||||||||||||||||||||||      
T  4585608 ttgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtc 4585707  T
Q  325 ctcctccgccttcttct 341  Q
    |||||||||||||||||    
T  4585708 ctcctccgccttcttct 4585724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 251 - 341
Target Start/End: Original strand, 4570970 - 4571060
Alignment:
Q  251 tgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    ||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| ||||||||||||  |||||||||||||||||    
T  4570970 tgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttct 4571060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 4613859 - 4613762
Alignment:
Q  244 ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    |||| ||||||||| ||| |||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||    
T  4613859 ttaagtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttct 4613762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 4560502 - 4560594
Alignment:
Q  249 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    ||||||||| |||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||  | |||||||||| ||||    
T  4560502 tttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttct 4560594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 4557121 - 4557209
Alignment:
Q  249 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 337  Q
    ||||||||| ||||||||| |||||||| |||| ||| ||||| ||||| ||||||||||| ||||||||||||  |||||||||||||    
T  4557121 tttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttc 4557209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 4574305 - 4574396
Alignment:
Q  250 ttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    |||||||| |||||||||||||||||| |||| ||| ||||||||  | ||||||||||||||||||||||||  | ||||| |||||||||    
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttct 4574396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 341
Target Start/End: Original strand, 4579421 - 4579520
Alignment:
Q  242 acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    |||||| || |||||| ||| || ||||||||||| |||| ||| ||||||||||| |||||||| |||||||||||||||  ||||||| |||||||||    
T  4579421 acttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttct 4579520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 4480693 - 4480781
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    ||||| ||||||||| |||||||| |||| ||||||||||||||| ||||||||||| |||||||| |||  |||||| ||| ||||||    
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttct 4480781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 337
Target Start/End: Original strand, 4598162 - 4598255
Alignment:
Q  244 ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 337  Q
    |||| ||||||| | |||||| ||||||||||| |||| ||| || |||||||| ||||||||||||||| |||||||   |||||||||||||    
T  4598162 ttaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttc 4598255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 4617022 - 4617110
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    ||||| |||||||||||| ||||| || | ||||| ||||||||| ||||||||||| || ||||| ||| ||||||| ||||||||||    
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttct 4617110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 4492955 - 4493018
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggt 316  Q
    ||||| ||||||||| || |||||||||| ||||||||||||||| ||||||||||| ||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggt 4493018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 341
Target Start/End: Original strand, 4516302 - 4516409
Alignment:
Q  234 aaaaaattacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgc 333  Q
    ||||||| |||| ||| | ||||| ||| |||| ||||||||| |||| ||| |||||||||| |||||||||||| || ||||| |||  |||||| ||    
T  4516302 aaaaaatcactttaatctaattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgc 4516401  T
Q  334 cttcttct 341  Q
    ||||||||    
T  4516402 cttcttct 4516409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 4614019 - 4613968
Alignment:
Q  89 gttaatatacatgccatataattatccaatatgcatatattcaaaccattca 140  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  4614019 gttaatatacctgctatataattatccaatgtgcatatattcaaaccattca 4613968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 4504523 - 4504441
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    ||||||||| || ||||| |||| ||||||||||||||| ||||||||||| ||| |||| |||  |||||| ||||||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttct 4504441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 4505857 - 4505922
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtct 318  Q
    ||||| |||||||||||||||||| || | |||||||||||||||  |||||||||| ||||||||    
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtct 4505922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 4515253 - 4515210
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttca 296  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||    
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttca 4515210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 4613933 - 4613888
Alignment:
Q  150 ctctagctgaagatgagttcacttacatcatcacttaaattcaata 195  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||    
T  4613933 ctcttgctgaagatcagttcatttacatcatcacttaaattcaata 4613888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 4601789 - 4601865
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcct 329  Q
    ||||| |||||||||||||||||| || | |||||||| |||| | ||||||||||| ||  |||| ||||||||||    
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcct 4601865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 3171747 - 3171797
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacc 309  Q
    ||||||||| |||||||| |||| ||| ||||||||||| |||||||||||    
T  3171747 tttaagcaagacctccttaatcactttatccaagttcatgtatgaacaacc 3171797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 4267292 - 4267214
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttc 337  Q
    ||||||||  |||||||| || | ||||||||||||||| |||||| |||| |||||||| ||| |||| || ||||||    
T  4267292 tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttc 4267214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 4392152 - 4392094
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtc 317  Q
    ||||||||| |||||||| |||| |||||||||||||||  ||||| |||| |||||||    
T  4392152 tttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtc 4392094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 4607027 - 4606957
Alignment:
Q  249 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc 319  Q
    ||||||||| ||||||||| |||| ||| |||| ||| ||||||||||| |||||| |||| || ||||||    
T  4607027 tttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctc 4606957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 4461123 - 4461211
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    ||||| ||||||||| || ||||| || | ||||||||||||| | ||||||  |||||||||||| ||   ||||||| |||||||||    
T  4461123 attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttct 4461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 20863986 - 20863887
Alignment:
Q  242 acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    |||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||| | ||||| |||  |||||| ||||||||||    
T  20863986 acttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttct 20863887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 1674226 - 1674314
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    ||||| |||||||||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| ||||||||||    
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttct 1674314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 222 - 320
Target Start/End: Complemental strand, 16686432 - 16686332
Alignment:
Q  222 actgctttgcataaaaaa--ttacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc 319  Q
    ||||| ||||||||||||  | |||||  ||||||||| ||||||||| |||||| | |||| ||| ||||||||||| ||||||||||| |||||||||    
T  16686432 actgcattgcataaaaaaagtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctc 16686333  T
Q  320 g 320  Q
    |    
T  16686332 g 16686332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 28000231 - 28000143
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    ||||| ||||| |||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| ||||| ||||    
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttct 28000143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 24103005 - 24103087
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    ||||||||  |||||||| || | ||||||||||||||| |||||| |||| |||| ||| ||| |||| || ||||||||||    
T  24103005 tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttct 24103087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 1281114 - 1281195
Alignment:
Q  253 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgcc 334  Q
    ||||| |||||||||||  ||||| |||| |||||| |||||||| ||||||||||| || ||||| ||| |||||||||||    
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgcc 1281195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 4812 - 4730
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct 341  Q
    ||||||||  |||||||| |||| ||||||||||||||| |||||||| || ||||  || ||| ||||||| ||||||||||    
T  4812 tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttct 4730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 3086426 - 3086476
Alignment:
Q  259 tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacc 309  Q
    ||||||||| |||||||| || | ||||||||||||||| |||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaacc 3086476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University