View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18666_low_1 (Length: 467)
Name: NF18666_low_1
Description: NF18666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18666_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 48 - 459
Target Start/End: Complemental strand, 6915887 - 6915476
Alignment:
| Q |
48 |
agttctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaa |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915887 |
agttctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacgaaaagtaggatcctctctttggaagcggttcaaagcttttgaaa |
6915788 |
T |
|
| Q |
148 |
atttccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagt |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915787 |
atttccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagt |
6915688 |
T |
|
| Q |
248 |
aaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcattcatctcattagaatgcatctcaact |
347 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
6915687 |
aaatgtatcgctggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcgttcatctcattagaatgcatctgaact |
6915588 |
T |
|
| Q |
348 |
aagcgaggaaccttaattttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactcttagatatgttaactgaccaa |
447 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6915587 |
aagcgaggaaccttaattttctttccagtgctaacattaacaataaaatcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaa |
6915488 |
T |
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| Q |
448 |
acttcctttgct |
459 |
Q |
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| T |
6915487 |
acttcgtttgct |
6915476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 15040241 - 15040345
Alignment:
| Q |
152 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat |
251 |
Q |
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| T |
15040241 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaa |
15040340 |
T |
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| Q |
252 |
gtatc |
256 |
Q |
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||||| |
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| T |
15040341 |
gtatc |
15040345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 15040064 - 15040137
Alignment:
| Q |
75 |
tgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
148 |
Q |
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| T |
15040064 |
tgcccactctctgggtccaagccaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
15040137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 15041840 - 15041895
Alignment:
| Q |
261 |
gatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat |
316 |
Q |
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| T |
15041840 |
gatgcacaatcaacaccaaatacagcaactatttggccagcatgagcctcatcaat |
15041895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 15043792 - 15043854
Alignment:
| Q |
366 |
ttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactctt |
428 |
Q |
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| T |
15043792 |
ttcttgccagtgttaacattaataatgaaatcacccttccgaatgacgccctcataaattctt |
15043854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 43895529 - 43895598
Alignment:
| Q |
103 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
172 |
Q |
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| T |
43895529 |
ggaaagtaggatcctttctttgaaaaccattcaaagcagttgaaaattgccctccagaatcttttgagac |
43895598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 44305953 - 44306022
Alignment:
| Q |
103 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
172 |
Q |
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| T |
44305953 |
ggaaagtaggatcctttctttgaaaaccattcaaagcacttgaaaattgccctccagaatcttttgagac |
44306022 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 35856932 - 35856854
Alignment:
| Q |
232 |
taaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctc |
310 |
Q |
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| T |
35856932 |
taacagacccatcagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctc |
35856854 |
T |
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