View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18666_low_7 (Length: 241)

Name: NF18666_low_7
Description: NF18666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18666_low_7
NF18666_low_7
[»] chr8 (2 HSPs)
chr8 (1-224)||(37377363-37377586)
chr8 (49-224)||(37384827-37384998)
[»] chr2 (3 HSPs)
chr2 (4-101)||(2419922-2420019)
chr2 (53-94)||(17500908-17500949)
chr2 (53-93)||(5904511-5904551)
[»] chr1 (2 HSPs)
chr1 (50-99)||(32462588-32462637)
chr1 (49-94)||(29692320-29692365)
[»] chr7 (1 HSPs)
chr7 (49-94)||(25730076-25730121)
[»] chr5 (2 HSPs)
chr5 (49-94)||(13595833-13595878)
chr5 (49-94)||(22916301-22916346)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37377363 - 37377586
Alignment:
Q  1 tcatgtgaaatagcaatttagtcatttatattgaaaaaatctatcagcatagtcattttctcaaattttgcaccacaattttaaaggttatatacttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37377363 tcatgtgaaatagcaatttagtcatttatattgaaaaaatctatcagcatagtcattttctcaaattttgcaccacaattttaaaggttatatacttgtt 37377462  T
Q  101 tatccctagctaggcaacaaaataggccttggccaattcattatttttattattgagatttgcgggttcaactggaaagatgatcaattttgtctttaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37377463 tatccctagctaggcaacaaaataggccttggccaattcattatttttattattgagatttgcgggttcaactggaaagatgatcaattttgtctttaac 37377562  T
Q  201 agatttgggagctacactccaatg 224  Q
    ||||||||||||||||||||||||    
T  37377563 agatttgggagctacactccaatg 37377586  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 37384827 - 37384998
Alignment:
Q  49 atagtcattttctcaaattttgcaccacaattttaaaggttatatacttgtttatccctagctag--gc--aacaaaataggccttggccaattcattat 144  Q
    |||||| |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||  ||   |||||||| ||||||||||       ||    
T  37384827 atagtccttttctcaaattttgcaccacatttttaaaggttatatgtttgtttatccctagctagtagctagacaaaatatgccttggcca-------at 37384919  T
Q  145 ttttattattgagatttgcgggttcaactggaaagatgatcaattttgtctttaacagatttgggagctacactccaatg 224  Q
    || ||||| ||| ||||| || ||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  37384920 ttgtattactgatatttgtggattcaactgg-aagatgatcaattctgtttttaacagatttgggagctaaactccaatg 37384998  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 2420019 - 2419922
Alignment:
Q  4 tgtgaaatagcaatttagtcatttatattgaaaaa-atctatcagcatagtcattttctcaaattttgcaccacaattttaaaggttatatacttgttt 101  Q
    ||||||||||||||||||||  ||| ||| ||||| ||| ||||   ||||| |||| |||||||||||||||||| |||||||||| || ||||||||    
T  2420019 tgtgaaatagcaatttagtctcttaaatttaaaaatatcaatcaatttagtctttttttcaaattttgcaccacaa-tttaaaggttttacacttgttt 2419922  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 17500908 - 17500949
Alignment:
Q  53 tcattttctcaaattttgcaccacaattttaaaggttatata 94  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  17500908 tcattttcttaaattttgtaccacaattttaaatgttatata 17500949  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 5904551 - 5904511
Alignment:
Q  53 tcattttctcaaattttgcaccacaattttaaaggttatat 93  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
T  5904551 tcattttctcaaaatttaaaccacaattttaaaggttatat 5904511  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 32462588 - 32462637
Alignment:
Q  50 tagtcattttctcaaattttgcaccacaattttaaaggttatatacttgt 99  Q
    |||||||||| ||||||||  ||||||||||||||||||| |||||||||    
T  32462588 tagtcattttttcaaatttaacaccacaattttaaaggttctatacttgt 32462637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 29692320 - 29692365
Alignment:
Q  49 atagtcattttctcaaattttgcaccacaattttaaaggttatata 94  Q
    ||||||||||||||||||||  ||||||||||||||| ||| ||||    
T  29692320 atagtcattttctcaaatttaacaccacaattttaaatgttctata 29692365  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 25730076 - 25730121
Alignment:
Q  49 atagtcattttctcaaattttgcaccacaattttaaaggttatata 94  Q
    ||||||||||||||||||||  ||||||||||||||| ||| ||||    
T  25730076 atagtcattttctcaaatttaacaccacaattttaaatgttctata 25730121  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 13595833 - 13595878
Alignment:
Q  49 atagtcattttctcaaattttgcaccacaattttaaaggttatata 94  Q
    ||||||||||||||||||||  ||||||||||||||| ||| ||||    
T  13595833 atagtcattttctcaaatttaacaccacaattttaaatgttctata 13595878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 22916301 - 22916346
Alignment:
Q  49 atagtcattttctcaaattttgcaccacaattttaaaggttatata 94  Q
    ||||||||||||||||||||  ||||||||||||||| ||| ||||    
T  22916301 atagtcattttctcaaatttaacaccacaattttaaatgttctata 22916346  T

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