View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18667_high_6 (Length: 312)
Name: NF18667_high_6
Description: NF18667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18667_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 198 - 293
Target Start/End: Complemental strand, 21831125 - 21831030
Alignment:
| Q |
198 |
cgttttccattacatttcatatttgtcatagcgttttccattccatttccaaaacctcctgccgccgatggccaccatggaacgccgaaagacgct |
293 |
Q |
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| T |
21831125 |
cgttttccattacatttcatatttgtcatagcgttttccattccatttccaaaacctcctgccgccgatggccaccatggaacgcagaaaaacgct |
21831030 |
T |
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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 21831309 - 21831237
Alignment:
| Q |
16 |
atccataaccgtaaccgacctctccttcttccctcaatttcctctcttccacttctctacc-aaacacaacac |
87 |
Q |
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| T |
21831309 |
atccataactgtaaccgacctctccttcttccctcaatttcctctcttccacttctctaccaaaacacaacac |
21831237 |
T |
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