View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18667_low_10 (Length: 285)
Name: NF18667_low_10
Description: NF18667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18667_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 266
Target Start/End: Original strand, 36147374 - 36147619
Alignment:
| Q |
24 |
acaacaacaacatgagtcttctcttagtattattcccacaagacaaatcatccaccacaacaacaactaaactaaattcaccttcctcttcctcttcttt |
123 |
Q |
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| T |
36147374 |
acaacaacaacatgagtcttctcttagtattattcccacaagacaaatcatccaccacaacaacaactaaactaaattcaccttcctcttcctcttcttt |
36147473 |
T |
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| Q |
124 |
ctcaccatca---tcatcttcaaaatctctcattatctccaaagcacaatccacactctcaatttgtgcacttctcctattcacaactctcctcctcttc |
220 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
36147474 |
ctcaccatcatcttcttcttcaaaatctctcattatctccaaagcacaatctacactctcaatctgtgcacttctcctcttcacaactctcctcctcttc |
36147573 |
T |
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| Q |
221 |
accctctccacactcccaaccaacccaccatcaccatcccccttac |
266 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36147574 |
accctctccacactcccaaccaccccaccatcaccatcccccttac |
36147619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 26573457 - 26573511
Alignment:
| Q |
205 |
aactctcctcctcttcaccctctccacactcccaaccaacccaccatcaccatcc |
259 |
Q |
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||||||| |||||| |||||||||||||| ||| | || |||||||||||||||| |
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| T |
26573457 |
aactctcttcctctccaccctctccacaccccctaacaccccaccatcaccatcc |
26573511 |
T |
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