View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18667_low_3 (Length: 515)
Name: NF18667_low_3
Description: NF18667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18667_low_3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 144 - 515
Target Start/End: Original strand, 28835782 - 28836167
Alignment:
| Q |
144 |
aatcagatgaattacctgttgtggtagtcagagtgagtccgatctgaaaacaacagaattatgggaaactgttgatgacagcaacataacaaaagggaac |
243 |
Q |
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| T |
28835782 |
aatcagatgaattacctgttgtggtagtcagagtgagtccgatctgaaaacaacagaattatgggaaactgttgatgacagcaacatgacaaaagggaac |
28835881 |
T |
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| Q |
244 |
aacgatgatgatgatgttgcgtaaatctcaaagaa--tgttgtttgcttaaaatgttggcattgagatttggacaaaaagcgtggaagtggcagtgttgt |
341 |
Q |
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| T |
28835882 |
aacgatgatgatgatgttgcgtaaatctcaaagaaaatgttgtttgcttacaatgttggcattgagatttggacaaaaagcgtggaagtggcagtgttgt |
28835981 |
T |
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| Q |
342 |
tcttttaaccgccactctgttctgtgtctgtgttaccaaaacattctcacttctaaattctgatgtcacaagaca-------agagagagatgggttcgc |
434 |
Q |
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| T |
28835982 |
tcttttaaccgccactctgttctgtgtctgtgttaccaaaacattctcacttctaaattctgatgtcacaagacaaagagagagagagagatgggttcgc |
28836081 |
T |
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| Q |
435 |
aattcttaggacaaacaatt-----gtttaactcctaactcaagtgaccgtgatttgaacccaaccctcaacttgtgttgtatatt |
515 |
Q |
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| T |
28836082 |
aattcttaggacaaacaattgtttagtttaactcctaactcaggtgaccgtgatttgaacccaaccctcagcttgtgttgtatatt |
28836167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 28835736 - 28835786
Alignment:
| Q |
77 |
tgacaatgacccatgattcagaaagaccttacatctctgaaatatcaatca |
127 |
Q |
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| T |
28835736 |
tgacaatgacccatgattcagaaagaccttatacctctgaaatatcaatca |
28835786 |
T |
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