View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18667_low_4 (Length: 488)
Name: NF18667_low_4
Description: NF18667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18667_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Original strand, 5654549 - 5655008
Alignment:
| Q |
19 |
tttctgtgttttgaatattcattcatatatgggaatgaatgattcagtaatattagtcaataattcctttaatttctgctgttagacaatttaatcaatt |
118 |
Q |
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| T |
5654549 |
tttctgtgttttgaatattcattcatatatgggaatgaatgattcagtaatattagtcaataattcctttaatttctgctgttagacaatttaatcaatt |
5654648 |
T |
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| Q |
119 |
ggataaagatcagatgactcaaattgtaactcgacaaatccataacatcaaatattagccgttccaatcttcatcaacggtcgagatcattgacttcaat |
218 |
Q |
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| T |
5654649 |
ggataaagatcagatgactcaaattgtaactcgacaaatccataacatcaaatattcgccgttccaatcttcatcaacggtcgagatcattgacttcaat |
5654748 |
T |
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| Q |
219 |
gataattgacaattgtgcagcaaagacatgctcattttttatcaagaagcnnnnnnntgagtgtatacatgttttggtgtctagacataatttcaaatgc |
318 |
Q |
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| T |
5654749 |
gataattgatgattgtgcagcaaagacatgctcattttttatcaagcagcaaaaaaatgagtgtatacatgttttggtgtctagacataatttcaaatgc |
5654848 |
T |
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| Q |
319 |
gaatgccagagcctatgaaatattgacacaaacacgaatactaggtaagacactgatacatacatttgaaaaatgtatcagacgccaaaaggaacacact |
418 |
Q |
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| T |
5654849 |
gaatgccggagcctatgaaatattgacacaaacacgaatactaggtaagacactgatacatacatttgaaaaatgtatcagacgccaaaaggaacacact |
5654948 |
T |
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| Q |
419 |
taactgctaaaagaaacaacataattacatttgactatgcaacctttgctgtaacctatg |
478 |
Q |
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| T |
5654949 |
taactgctaaaagaaacaacataattacatttgactatgcaacctttgctgtaacctatg |
5655008 |
T |
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