View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18667_low_5 (Length: 454)
Name: NF18667_low_5
Description: NF18667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18667_low_5 |
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| [»] scaffold0187 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 171 - 439
Target Start/End: Original strand, 37881940 - 37882205
Alignment:
| Q |
171 |
tctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtctataatt |
269 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37881940 |
tctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatctttcaagtttattctttcttcatgtctataatt |
37882039 |
T |
|
| Q |
270 |
taattctaatttagagaacagtgcaaagtattcggataaaatgttccactcgtaagttacnnnnnnnnnnnngctaaggaacttcagtaaagagatcata |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37882040 |
taattctaatttagagaacagtgcaaagtattcggataaagtgttccactcgtaagttac----ttttttttgctaaggaacttcagtaaagagatcata |
37882135 |
T |
|
| Q |
370 |
gttatcaaaacacagattgtggttgcgaacttgcagtggtggatgcagtcatgaccgctactattgtgat |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37882136 |
gttatcaaaacacagattgtggttgcgaacttgcagtggtggatgcagtcatgaccgctactattgtgat |
37882205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 37881788 - 37881902
Alignment:
| Q |
19 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
37881788 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatc |
37881887 |
T |
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| Q |
119 |
agtaggatacgaaca |
133 |
Q |
| |
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||||||||||||||| |
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| T |
37881888 |
agtaggatacgaaca |
37881902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 37855560 - 37855668
Alignment:
| Q |
19 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
37855560 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatc |
37855659 |
T |
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| Q |
119 |
agtaggata |
127 |
Q |
| |
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||||||||| |
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| T |
37855660 |
agtaggata |
37855668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 37867748 - 37867856
Alignment:
| Q |
19 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
37867748 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatc |
37867847 |
T |
|
| Q |
119 |
agtaggata |
127 |
Q |
| |
|
||||||||| |
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|
| T |
37867848 |
agtaggata |
37867856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 37911733 - 37911841
Alignment:
| Q |
19 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
37911733 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatc |
37911832 |
T |
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| Q |
119 |
agtaggata |
127 |
Q |
| |
|
||||||||| |
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|
| T |
37911833 |
agtaggata |
37911841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 37911890 - 37911958
Alignment:
| Q |
172 |
ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt |
240 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
37911890 |
ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatcttt |
37911958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 106; Significance: 7e-53; HSPs: 6)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 6688 - 6571
Alignment:
| Q |
19 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatc |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| |
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| T |
6688 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgaatttctgaatctcaaattcattgccaagctcaacctgatc |
6589 |
T |
|
| Q |
119 |
agtaggatacgaacaatc |
136 |
Q |
| |
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|||||||||||||||||| |
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| T |
6588 |
agtaggatacgaacaatc |
6571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 17016 - 16908
Alignment:
| Q |
19 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
17016 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatc |
16917 |
T |
|
| Q |
119 |
agtaggata |
127 |
Q |
| |
|
||||||||| |
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|
| T |
16916 |
agtaggata |
16908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 27344 - 27236
Alignment:
| Q |
19 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| |
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| T |
27344 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaaggtcaacctgatc |
27245 |
T |
|
| Q |
119 |
agtaggata |
127 |
Q |
| |
|
||||||||| |
|
|
| T |
27244 |
agtaggata |
27236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 6533 - 6441
Alignment:
| Q |
172 |
ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtct |
263 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||| |||| |
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| T |
6533 |
ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataacctttcaagtttattctctcttcacgtct |
6441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 6424 - 6387
Alignment:
| Q |
265 |
taatttaattctaatttagagaacagtgcaaagtattc |
302 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| |
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|
| T |
6424 |
taatttagttttaatttagagaacagtgcaaagtattc |
6387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 27170 - 27093
Alignment:
| Q |
188 |
tattgattatcatttgtgaactatgccaattaatg-taaatatgaataatcttt-aagtttattctttcttcatgtct |
263 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| | |||||||||||| ||| | ||||||||| |||| |||||| |
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| T |
27170 |
tattgattatcatttgtaaactatgataattaatgtttaatatgaataatatttcatgtttattctctcttaatgtct |
27093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 45759376 - 45759321
Alignment:
| Q |
19 |
gtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaa |
74 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
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|
| T |
45759376 |
gtagctgatcctgttattgacatgagagctacagcttttattgctcgatacaagaa |
45759321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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