View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18667_low_6 (Length: 405)

Name: NF18667_low_6
Description: NF18667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18667_low_6
NF18667_low_6
[»] chr5 (5 HSPs)
chr5 (19-169)||(39679448-39679598)
chr5 (255-396)||(39679239-39679380)
chr5 (19-132)||(39642636-39642749)
chr5 (19-142)||(39637944-39638067)
chr5 (354-391)||(3936968-3937005)
[»] chr1 (1 HSPs)
chr1 (19-142)||(7056498-7056621)
[»] chr6 (1 HSPs)
chr6 (335-391)||(20391577-20391635)
[»] chr3 (1 HSPs)
chr3 (354-391)||(43733707-43733744)
[»] chr8 (1 HSPs)
chr8 (354-391)||(36588607-36588644)
[»] chr4 (2 HSPs)
chr4 (354-391)||(45618674-45618711)
chr4 (354-391)||(40199318-40199355)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 39679598 - 39679448
Alignment:
Q  19 gttgcgtcggtgcaccagaactcgacgtggtggaagcgttttacattgaaccggtctgattttgggttggctcgaacgaagttcttgaagccaactaatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  39679598 gttgcgtcggtgcaccagaactcgacgtggtggaagcgttttacattgaaccggtctgattttgggttggctctgacgaagttcttgaagccaactaatt 39679499  T
Q  119 tgaacccggtttgggtttgggtttgggtttctgtttcgatggccatggaga 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39679498 tgaacccggtttgggtttgggtttgggtttctgtttcgatggccatggaga 39679448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 255 - 396
Target Start/End: Complemental strand, 39679380 - 39679239
Alignment:
Q  255 aggggatgtgaaacgtggaggaatgtgattggatgagagtaatggagtggcggcgtggttggagttttgtgtgttgcgtgggagaaatggtgtgtgaggg 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39679380 aggggatgtgaaacgtggaggaatgtgattggatgagagtaatggagtggcggcgtggttggagttttgtgtgttgcgtgggagaaatggtgtgtgagag 39679281  T
Q  355 tggatggatgaggatgaaggaaaaaatggtgaagatgatgat 396  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39679280 tggatggatgaggatgaaggaaaaaatggtgaagatgatgat 39679239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 39642636 - 39642749
Alignment:
Q  19 gttgcgtcggtgcaccagaactcgacgtggtggaagcgttttacattgaaccggtctgattttgggttggctcgaacgaagttcttgaagccaactaatt 118  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| ||| | ||| || ||| | |||||||| |    
T  39642636 gttgcgtcggtgcaccagaactcgacgtggtggaagtgttttactttgaaccggtctgtttttgggttggttcggatgaaatttttgcacccaactaact 39642735  T
Q  119 tgaacccggtttgg 132  Q
    ||||||||||||||    
T  39642736 tgaacccggtttgg 39642749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 39637944 - 39638067
Alignment:
Q  19 gttgcgtcggtgcaccagaactcgacgtggtggaagcgttttacattgaaccggtctgattttgggttggctcgaacgaagttcttgaagccaactaatt 118  Q
    |||||||| ||||||||||||||||||||||| |||||||| |  |||||   ||||||||||||||||||||  |||||||| || || |||||||| |    
T  39637944 gttgcgtcagtgcaccagaactcgacgtggtgaaagcgtttgaatttgaataagtctgattttgggttggctcagacgaagtttttaaatccaactaact 39638043  T
Q  119 tgaacccggtttgggtttgggttt 142  Q
    ||||||||||||||||| ||||||    
T  39638044 tgaacccggtttgggttcgggttt 39638067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 3937005 - 3936968
Alignment:
Q  354 gtggatggatgaggatgaaggaaaaaatggtgaagatg 391  Q
    |||||||||||||| |||||||||||||||||||||||    
T  3937005 gtggatggatgagggtgaaggaaaaaatggtgaagatg 3936968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 7056498 - 7056621
Alignment:
Q  19 gttgcgtcggtgcaccagaactcgacgtggtggaagcgttttacattgaaccggtctgattttgggttggctcgaacgaagttcttgaagccaactaatt 118  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||||||||| ||| | ||| || ||||| |||||||| |    
T  7056498 gttgcgtcggtgcaccagaattccacgtggtggaagcgttttactttgaaacggtctgtttttgggttggttcggatgaattttttgaacccaactaact 7056597  T
Q  119 tgaacccggtttgggtttgggttt 142  Q
    |||||||||||| |||||| ||||    
T  7056598 tgaacccggttttggtttgtgttt 7056621  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 20391635 - 20391577
Alignment:
Q  335 ggagaaatggtgtg--tgagggtggatggatgaggatgaaggaaaaaatggtgaagatg 391  Q
    ||||||||||||||  || | ||||||||||||||||||||||||||||||||||||||    
T  20391635 ggagaaatggtgtgagtgtgagtggatggatgaggatgaaggaaaaaatggtgaagatg 20391577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 43733707 - 43733744
Alignment:
Q  354 gtggatggatgaggatgaaggaaaaaatggtgaagatg 391  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43733707 gtggatggatgaggatgaaggaaaaaatggtgaagatg 43733744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 36588644 - 36588607
Alignment:
Q  354 gtggatggatgaggatgaaggaaaaaatggtgaagatg 391  Q
    |||||||||||||| |||||||||||||||||||||||    
T  36588644 gtggatggatgagggtgaaggaaaaaatggtgaagatg 36588607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 45618711 - 45618674
Alignment:
Q  354 gtggatggatgaggatgaaggaaaaaatggtgaagatg 391  Q
    |||||||||||||| |||||||||||||||||||||||    
T  45618711 gtggatggatgagggtgaaggaaaaaatggtgaagatg 45618674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 40199318 - 40199355
Alignment:
Q  354 gtggatggatgaggatgaaggaaaaaatggtgaagatg 391  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  40199318 gtggatggatgaggatgaaggaaataatggtgatgatg 40199355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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