View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_high_1 (Length: 765)
Name: NF18668_high_1
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 60 - 566
Target Start/End: Complemental strand, 54413350 - 54412845
Alignment:
| Q |
60 |
taggtatgccaaactaaaaatattccaatataatgctcagtttgattaacgatagcccaaggtcgacaaaagtaaattcaatgtcttccaaaaagtaaat |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54413350 |
taggtatgccaaactaaaaatattccaatataatgctcagtttgattaacgatagcccaaggtcgacaaaagtaaattcaatgtcttccaaaaagtaaat |
54413251 |
T |
|
| Q |
160 |
taaatgtaaaatatgatatttcttatacggaattatacaacgttactttctgtgtaatgtatactataacgccttaatattgtataacttatggttaaan |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54413250 |
taaatgtaaaatatgatatttcttatacggaattatacaacgttactttctgtgtaatgtatactataacgccttgatattgtataacttatggttaaat |
54413151 |
T |
|
| Q |
260 |
nnnnnnnnnnnnaccaactaacggattaaaaataatagaaatttagatatttgttcacaatgattaagctccacagggaccgagggatctacggatatag |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54413150 |
tttttattttttaccaactaacggattaaaaataatagaaatttagatatttgttcacaatgattaagctccacagggaccgagggatctaaggatatag |
54413051 |
T |
|
| Q |
360 |
ggatggaggaaaaactctgaggacgaggaataatttgagtgacgggacaaggagcggaaaagtactctttgtccccgctccgccgcattgacatctataa |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54413050 |
ggatggaggaaaaactctgaggacgaggaataatttgagtgatgggacaaggagcggaaaagtactctttgtccccgctccgccgcattgacatctataa |
54412951 |
T |
|
| Q |
460 |
ccgacacatattttacatgtttaatttatagaatctaaaatataatcatgataatgaattttattggcgtttacaactcgtctcgtgggagtttgtaatt |
559 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||| |||||||||||||||||||||||| |
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| T |
54412950 |
ccgacacatattttacatgtttaatttatagaatctaaaatat-atcatgataatgaatcccaatagcgtttacatctcgtctcgtgggagtttgtaatt |
54412852 |
T |
|
| Q |
560 |
gtttgga |
566 |
Q |
| |
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||||||| |
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| T |
54412851 |
gtttgga |
54412845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 54413411 - 54413374
Alignment:
| Q |
8 |
tgtccaagaatattatcctattgttcgtgtgaatacac |
45 |
Q |
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|||||| ||||||||||||||||||||| ||||||||| |
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| T |
54413411 |
tgtccatgaatattatcctattgttcgtttgaatacac |
54413374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 612
Target Start/End: Complemental strand, 9370147 - 9370108
Alignment:
| Q |
573 |
gtctaaggtgggagaccttaataggtctcctacggtgcat |
612 |
Q |
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| T |
9370147 |
gtctagggtgggagaccttaataggtctcctacggtgcat |
9370108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 612
Target Start/End: Original strand, 47817426 - 47817465
Alignment:
| Q |
573 |
gtctaaggtgggagaccttaataggtctcctacggtgcat |
612 |
Q |
| |
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| T |
47817426 |
gtctagggtgggagaccttaataggtctcctacggtgcat |
47817465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 612
Target Start/End: Complemental strand, 23669291 - 23669252
Alignment:
| Q |
573 |
gtctaaggtgggagaccttaataggtctcctacggtgcat |
612 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
23669291 |
gtctagggtgggagaccttaataggtctcctacggtgcat |
23669252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 608
Target Start/End: Original strand, 50123934 - 50123963
Alignment:
| Q |
579 |
ggtgggagaccttaataggtctcctacggt |
608 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50123934 |
ggtgggagaccttaataggtctcctacggt |
50123963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 566 - 605
Target Start/End: Original strand, 1670199 - 1670238
Alignment:
| Q |
566 |
aggctcagtctaaggtgggagaccttaataggtctcctac |
605 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |
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| T |
1670199 |
aggctcagtctaaggtgggagaccttgataggtctcctac |
1670238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 567 - 605
Target Start/End: Original strand, 6815255 - 6815293
Alignment:
| Q |
567 |
ggctcagtctaaggtgggagaccttaataggtctcctac |
605 |
Q |
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||||||||||| ||||||||||||| ||||||||||||| |
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| T |
6815255 |
ggctcagtctagggtgggagaccttgataggtctcctac |
6815293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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