View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_high_12 (Length: 408)
Name: NF18668_high_12
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 35868813 - 35869195
Alignment:
| Q |
10 |
aagaatataggaaatataaagcatagccagagttccatctctaagattttgaatgctgaggtttatataaggttagttcctgtaaggaaatctaattgtg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35868813 |
aagaatataggaaatataaagcatagccagagttccatctctaagattttgaatgctgaggtttatataaggttagttcctgtaaagaaatctaattgtg |
35868912 |
T |
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| Q |
110 |
agtgaattttttaatatctttgagactgaacatacaatattagctaaatggataattgaggttaccttagaaaagaattcatgatcatgatgcaaatttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35868913 |
agtgaattttttaatatctttgagactgaacatacaatattagctaaatggataattgaggttaccttcgaaaagaattcatgatcatgatgcaaatttg |
35869012 |
T |
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| Q |
210 |
aagttttcactattgtttcccatttgctatagctggatgctctactataacctatccttttaacagcctgtgattgtgttcctcgactcgaatacacgga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35869013 |
aagttttcactattgtttcccatttgctatagctggatgctctactataacctatccttttaacagcctgtgattgtgttcctcgactcgaatacacgga |
35869112 |
T |
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| Q |
310 |
cggactcttcaatgaaactaaaggcaatgcacgacaaagccacgactcagaaggtgactttggcaatggtggggaaagaaggt |
392 |
Q |
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| T |
35869113 |
cagactcttcaatgaaactaaaggcaatgcacgacaaagccacgactcagaaggtgactttggcaatggtggggaaagaaggt |
35869195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 24443014 - 24443396
Alignment:
| Q |
10 |
aagaatataggaaatataaagcatagccagagttccatctctaagattttgaatgctgaggtttatataaggttagttcctgtaaggaaatctaattgtg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24443014 |
aagaatataggaaatataaagcatagccagagttccatctctaagattttgaatgctgaggtttatataaggttagttcctgtaaagaaatctaattgtg |
24443113 |
T |
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| Q |
110 |
agtgaattttttaatatctttgagactgaacatacaatattagctaaatggataattgaggttaccttagaaaagaattcatgatcatgatgcaaatttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24443114 |
agtgaattttttaatatctttgagactgaacatacaatattagctaaatggataattgaggttaccttcgaaaagaattcatgatcatgatgcaaatttg |
24443213 |
T |
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| Q |
210 |
aagttttcactattgtttcccatttgctatagctggatgctctactataacctatccttttaacagcctgtgattgtgttcctcgactcgaatacacgga |
309 |
Q |
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| T |
24443214 |
aagttttcactattgtttcccatttgctatagctggatgctctactataacctatccttttaacagcctgtgattgtgttcctcgactcgaatacacgga |
24443313 |
T |
|
| Q |
310 |
cggactcttcaatgaaactaaaggcaatgcacgacaaagccacgactcagaaggtgactttggcaatggtggggaaagaaggt |
392 |
Q |
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| T |
24443314 |
cagactcttcaatgaaactaaaggcaatgcacgacaaagccacgactcagaaggtgactttggcaatggtggggaaagaaggt |
24443396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 4916181 - 4916136
Alignment:
| Q |
189 |
catgatcatgatgcaaatttgaagttttcactattgtttcccattt |
234 |
Q |
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| T |
4916181 |
catgaccatgctgcaaatttgaagttttcactattgtttcccattt |
4916136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 4910016 - 4909974
Alignment:
| Q |
189 |
catgatcatgatgcaaatttgaagttttcactattgtttccca |
231 |
Q |
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| T |
4910016 |
catgaccatgctgcaaatttgaagttttcactattgtttccca |
4909974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 4909864 - 4909827
Alignment:
| Q |
344 |
caaagccacgactcagaaggtgactttggcaatggtgg |
381 |
Q |
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|||||||| |||||||||||||| |||||||||||||| |
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| T |
4909864 |
caaagccaagactcagaaggtgattttggcaatggtgg |
4909827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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