View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18668_high_24 (Length: 322)

Name: NF18668_high_24
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18668_high_24
NF18668_high_24
[»] chr1 (1 HSPs)
chr1 (16-304)||(43863713-43864001)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 43863713 - 43864001
Alignment:
Q  16 catcatgcgaattactatttctatcttcaacacgtttttgaatcatacgatcaaaaatctcatgcaatcttacatatgaaaccttaacgtgtctcttcac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43863713 catcatgcgaattactatttctatcttcaacacgtttttgaatcatacgatcaaaaatctcatgcaatcttacatatgaaaccttaacgtgtctcttcac 43863812  T
Q  116 accttgcagatcaaacatcttcaccactggaaaataatcagaaacattcactttcccagcatcttccattatcctccatacaagctctttaaactcacca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43863813 accttgcagatcaaacatcttcaccactggaaaataatcagaaacattcactttcccagcatcttccattatcctccatacaagctctttaaactcacca 43863912  T
Q  216 gcactctcgaactccgaatcaacaaggtcctctgagaacaccgtgttggaaaccaagttcaacattgtggcgaaagcaagttcacctat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43863913 gcactctcgaactccgaatcaacaaggtcctctgagaacaccgtgttggaaaccaagttcaacatggtggcgaaagcaagttcacctat 43864001  T

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