View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_high_26 (Length: 313)
Name: NF18668_high_26
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_high_26 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 47543847 - 47544131
Alignment:
| Q |
11 |
cacagacatctgatccttatgaacttggacttcagcctactgtaaaaggtttgaattgttaaacacatttgtatgcaattatgaagtttaacatagaaaa |
110 |
Q |
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| T |
47543847 |
cacagacatctgatccttatgaacttggacttcatcctactgcaaaaggtttgaattgttaaacacatttgtatgcaattatgaagtttaacatagaaaa |
47543946 |
T |
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| Q |
111 |
catttgcatgggaaatttataaaagttatccgtcttttgtattttatttatctgtagagtgtggccctgctggagctccttccatgccacagaaacctgt |
210 |
Q |
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| T |
47543947 |
catttgcatgggaaatttataaaagttatccgtcttttgtattttatttatctgtagagtgtggccctgctggagctccttccatgccacagaaacctgt |
47544046 |
T |
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| Q |
211 |
tgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaat |
295 |
Q |
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| T |
47544047 |
tgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatagagacaat |
47544131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 294
Target Start/End: Original strand, 47527660 - 47527761
Alignment:
| Q |
187 |
tccttccatgccacagaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaat |
286 |
Q |
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| T |
47527660 |
tccttgcatgccaaagaaaccagctgttaca---atcaagtcaacaacaagtggatcatcagacgatgaggaaggtgat---ggagagattaatatgaat |
47527753 |
T |
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| Q |
287 |
ggagacaa |
294 |
Q |
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| T |
47527754 |
ggagacaa |
47527761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 10266952 - 10266914
Alignment:
| Q |
110 |
acatttgcatgggaaatttataaaagttatccgtctttt |
148 |
Q |
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| T |
10266952 |
acatttgcatgggaaatttataaaagttatccgtatttt |
10266914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 101322 - 101411
Alignment:
| Q |
202 |
gaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaa |
294 |
Q |
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| T |
101322 |
gaaacctgttgttacaac---caggtcaacgacaagtggatcctcaggcgaagatgaggcttatcaaggagagattaatatgaatggagacaa |
101411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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