View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_high_31 (Length: 279)
Name: NF18668_high_31
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_high_31 |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: scaffold0648 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 5889 - 5627
Alignment:
| Q |
1 |
atgaaaaaagtgaaagaaatggtcatgttgagcaatatgccagaagctggtttcacattttggtatttataagttcttgattccaactttagaacaaata |
100 |
Q |
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| T |
5889 |
atgaaaaaagtgatagaaatggtcatgttgagcaatatgccagaagctggtttcacattttggtatttataagttcttgattcaaactttagaacaaata |
5790 |
T |
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| Q |
101 |
tatggagtggacaccaccaaggaaaaatttgggaatatttcaacaaggatgtattataaagaaaacaagccaggaccttttcaatagggcggtaacttga |
200 |
Q |
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| T |
5789 |
tatggagtggacaccaccaaggaaaaatttgggaatatttcaacaaggatgtattataaagaaaacaagccaggaccttttcaatagggcggtaacttga |
5690 |
T |
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| Q |
201 |
cctacattgtcaatagcaatgaacaaagtttgatagaaaaacttaacaatgattggatatacc |
263 |
Q |
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| T |
5689 |
cctacattgtcaatagcaatgaacaaagtttgatagaaaaacttaacaatgattggatatacc |
5627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 17569 - 17831
Alignment:
| Q |
1 |
atgaaaaaagtgaaagaaatggtcatgttgagcaatatgccagaagctggtttcacattttggtatttataagttcttgattccaactttagaacaaata |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17569 |
atgaaaaaagtgatagaaatggtcatgttgagcaatatgccagaagctggtttcacattttggtatttataagttcttgattcaaactttagaacaaata |
17668 |
T |
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| Q |
101 |
tatggagtggacaccaccaaggaaaaatttgggaatatttcaacaaggatgtattataaagaaaacaagccaggaccttttcaatagggcggtaacttga |
200 |
Q |
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| T |
17669 |
tatggagtggacaccaccaaggaaaaatttgggaatatttcaacaaggatgtattataaagaaaacaagccaggaccttttcaatagggcggtaacttga |
17768 |
T |
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| Q |
201 |
cctacattgtcaatagcaatgaacaaagtttgatagaaaaacttaacaatgattggatatacc |
263 |
Q |
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| T |
17769 |
cctacattgtcaatagcaatgaacaaagtttgatagaaaaacttaacaatgattggatatacc |
17831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 41426401 - 41426144
Alignment:
| Q |
1 |
atgaaaaaagtgaaagaaatggtcatgttgagcaatatgccagaagctggtttcacattttggtatttataagttcttgattccaactttagaacaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41426401 |
atgaaaaaagtgaaagaaatggtcatgttgagcaatatgccagaagctggtttcacattttggtatttat-----cttgattccaactttagaacaaata |
41426307 |
T |
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| Q |
101 |
tatggagtggacaccaccaaggaaaaatttgggaatatttcaacaaggatgtattataaagaaaacaagccaggaccttttcaatagggcggtaacttga |
200 |
Q |
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| T |
41426306 |
tatggagtggacaccaccaaggaaaaatttgggaatatttcaacaaggatgtattataaagaagacaagccatgaccttttcaatagggcggtaacttga |
41426207 |
T |
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| Q |
201 |
cctacattgtcaatagcaatgaacaaagtttgatagaaaaacttaacaatgattggatatacc |
263 |
Q |
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| T |
41426206 |
cccacattgtcaatagcaatgaacaaaatttgatagaaaaacttaacaatgattggatatacc |
41426144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 259
Target Start/End: Complemental strand, 41453605 - 41453397
Alignment:
| Q |
50 |
gtttcacattttggtatttataagttcttgattccaactttagaacaaatatatggagtggacaccaccaaggaaaaatttgggaatatttcaacaagga |
149 |
Q |
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|||||||| | ||||| ||| ||||||||||| |||| || | ||||||||| || ||||||||| | | ||||||||||||| ||| |||||| ||||| |
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| T |
41453605 |
gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtg-agtggacactaacgaggaaaaatttggaaatctttcaaaaagga |
41453507 |
T |
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| Q |
150 |
tgtattataaagaaaacaagccaggaccttttcaatagggcggtaacttgacctacattgtcaatagcaatgaacaaagtttgatagaaaaacttaacaa |
249 |
Q |
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| T |
41453506 |
agtattataaagaaaacatgccaaaaccgtttcgataagacgggaactagacctaccatgtcaatagtaatgaacgaagtttgtttaaaaaaattaacaa |
41453407 |
T |
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| Q |
250 |
tgattggata |
259 |
Q |
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| T |
41453406 |
tgattggata |
41453397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 41431792 - 41431738
Alignment:
| Q |
3 |
gaaaaaagtgaaagaaatggtcatgttgagcaatatgccagaagctggtttcaca |
57 |
Q |
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| T |
41431792 |
gaaaaaagtcaaagatatggtcaggttgatcaatatgccagaaacaggtttcaca |
41431738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 33363556 - 33363423
Alignment:
| Q |
36 |
tatgccagaagctggtttcacattttggtatttataagttcttgattccaactttagaacaaatatatggagtggacaccaccaaggaaaaatttgggaa |
135 |
Q |
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| T |
33363556 |
tatgccggaagcaggtttgacattatggcatttataagttcttgattccaatttcagaacaaatatatggtgtggacgccaccgaggaaatatttggcaa |
33363457 |
T |
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| Q |
136 |
tatttcaacaaggatgtattataaagaaaacaag |
169 |
Q |
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| T |
33363456 |
tctttcaacaaggatatatcatgaagaaaacaag |
33363423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 33370075 - 33369916
Alignment:
| Q |
6 |
aaaagtgaaagaaatggtcatgttgagcaatatgccagaagctggtttcacattttggtatttataagttcttgattccaactttagaacaaatatatgg |
105 |
Q |
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|||||||||||||||||||| |||||||||| || ||||||| ||||||||| | || | |||||||||||||||||||| | | ||||| ||| | |
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| T |
33370075 |
aaaagtgaaagaaatggtcaggttgagcaatttg-cagaagcaggtttcaca--ctagtgtctataagttcttgattccaacgtcaaaacaagtatctat |
33369979 |
T |
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| Q |
106 |
agtggacaccaccaaggaaaaatttgggaatatttcaacaaggatgtattataaagaaaacaag |
169 |
Q |
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|| | | || ||| | ||||||||| || || ||||| ||||||||||||||||||||||||| |
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| T |
33369978 |
agagaatacaacccatgaaaaattt-ggcattcttcaataaggatgtattataaagaaaacaag |
33369916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 7763110 - 7763222
Alignment:
| Q |
3 |
gaaaaaagtgaaagaaatggtcatgttgagcaatatgccagaagctggtttcacattttggtatttataagttcttgattccaactttagaacaaatata |
102 |
Q |
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||||||||| ||| ||||||||| |||||| | | ||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||||||||||| |
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| T |
7763110 |
gaaaaaagtcaaataaatggtcaggttgagtgaaaagccagaagcaggtttcacattatggtatttatatgttcttgattccaatttcagaacaaatata |
7763209 |
T |
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| Q |
103 |
tggagtggacacc |
115 |
Q |
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||||||||||||| |
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| T |
7763210 |
tggagtggacacc |
7763222 |
T |
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Back To:
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