View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18668_high_6 (Length: 583)
Name: NF18668_high_6
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 39576363 - 39576868
Alignment:
| Q |
1 |
aaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
39576363 |
aaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtatggtagaaaattcgtaggaggattcagaatggaaaat |
39576462 |
T |
|
| Q |
101 |
tcttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggtttgattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
39576463 |
tcttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaatgattttttagggtaagcatggtttgattca |
39576562 |
T |
|
| Q |
201 |
ccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
39576563 |
ccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgtagtg |
39576662 |
T |
|
| Q |
301 |
atgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagagaggaaagttttgtttggttgatgattttttaagctat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39576663 |
atgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagagaggaaagttttgtttggttgatgattttttaagctat |
39576762 |
T |
|
| Q |
401 |
gatgatattgatgattgaaattcttgtaacttatcagtagtgaaagggaaccaatgaagaatggagtgagataagaggaagacttaagccgtggagtgtg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39576763 |
gatgatattgatgattgaaattcttgtaacttatcagtagtgaaagggaaccaatgaagaatggagtgagataagaggaagacttaagccgtggagtgtg |
39576862 |
T |
|
| Q |
501 |
gttaag |
506 |
Q |
| |
|
|||||| |
|
|
| T |
39576863 |
gttaag |
39576868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 39521718 - 39522032
Alignment:
| Q |
1 |
aaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| ||||| ||||| ||||| || | ||| ||||||| |
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|
| T |
39521718 |
aaaggttagttggtgaagagaatgaaaagaaatggaaacgtaccatgtaagtgttgcttggaacggttttgaattcataggaagaattggaaaggaaaat |
39521817 |
T |
|
| Q |
101 |
tcttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggtttgattca |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| || | ||| || |||| | |||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
39521818 |
tcttgctgtttggttgagaggtgaagacactggtgattgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggtttgattca |
39521917 |
T |
|
| Q |
201 |
ccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtg |
300 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| || | || |
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|
| T |
39521918 |
ccaatataaaggttgttattttcattcacgtcgatatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatg |
39522017 |
T |
|
| Q |
301 |
atgagaattgaagaa |
315 |
Q |
| |
|
||||||||||||||| |
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|
| T |
39522018 |
atgagaattgaagaa |
39522032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 39544511 - 39544862
Alignment:
| Q |
1 |
aaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| |||||| || ||||||||||||| |||||||||||| ||||| || || |||||||| || |
|
|
| T |
39544511 |
aaaggttagttggtgaagagaatgaaaagaaatggaaacataccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatat |
39544610 |
T |
|
| Q |
101 |
tcttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggtttgattca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| |||| || | ||| || |||| ||| || ||||| | |||| ||||||| | ||||||||||| |
|
|
| T |
39544611 |
ccttgctgtttggtagagaggtgaaaacactggtgattgacttgttactttggagcttttt---ctgaaacttgtttttgggtaagtagggtttgattca |
39544707 |
T |
|
| Q |
201 |
ccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtg |
300 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||| || || || | || |
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|
| T |
39544708 |
ccaatataaaggttgttattttcattcacgtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatg |
39544807 |
T |
|
| Q |
301 |
atgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgg |
358 |
Q |
| |
|
||| ||||| ||||||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
39544808 |
atgcgaatt---gaagaagaaaagcaagtaaaatgatagtgtgttgaactgccattgg |
39544862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 11 - 422
Target Start/End: Original strand, 39525225 - 39525636
Alignment:
| Q |
11 |
tggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtt |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| || ||||| | ||||| ||||| || || ||||||||| |
|
|
| T |
39525225 |
tggtgaagagaatgaaaagaaatggaaacgtaccatgtaggtgttgtttggtacggttttgaactcgtataaagattcggaatgaaatatccttgctgtt |
39525324 |
T |
|
| Q |
111 |
tggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaataattttttagggtaagcatggtttgattcaccaatataaa |
210 |
Q |
| |
|
||||| |||||||||| |||||||||| || ||||||||||||| ||| | |||||| | |||||||||| |||||||||| |||||||||| |
|
|
| T |
39525325 |
tggtagagaggtgaaggcactgatgattgactggtttctatggagctttt---gctgaaacttgttttagggtagttggggtttgattccccaatataaa |
39525421 |
T |
|
| Q |
211 |
gattcttattttcattcac------gtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtgatga |
304 |
Q |
| |
|
|| ||| ||||| | || || | |||||||||||||| ||||||||||| | ||||| | |||||||||||| | ||||||| | |||||| |
|
|
| T |
39525422 |
ctttattactttcagtaacagtaacgttgctatctgatccacaactgatgaagtatatgtcttgttcatcgtatccgagcgaggggaagtataatgatga |
39525521 |
T |
|
| Q |
305 |
gaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagagaggaaagttttgtttggttgatgattttttaagctatgatg |
404 |
Q |
| |
|
|||||||| ||||| |||| ||||| ||||||||||||||||||||||| | ||||| |||| || |||||| |||||||||||||||||||||||| |
|
|
| T |
39525522 |
gaattgaataagaa---aagcaagtaagatgatagagtgttgaattgccatggagagagttgaaaattatgtttgtttgatgattttttaagctatgatg |
39525618 |
T |
|
| Q |
405 |
atattgatgattgaaatt |
422 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
39525619 |
atattgatgattgcaatt |
39525636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 409 - 506
Target Start/End: Original strand, 39571587 - 39571684
Alignment:
| Q |
409 |
tgatgattgaaattcttgtaacttatcagtagtgaaagggaaccaatgaagaatggagtgagataagaggaagacttaagccgtggagtgtggttaag |
506 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39571587 |
tgatgattgaaattcttaaaagttagaagtagtgaaggggaaccaatgaagaatggagtgagataagaggaagacttaagccgtggagtgtggttaag |
39571684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 39511472 - 39511625
Alignment:
| Q |
1 |
aaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||||||||||||| ||||||||||| | ||| |||||||| | ||||| ||| ||||||| |
|
|
| T |
39511472 |
aaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatataggtgttgtttgggatggttttgaattcgtaccaagattcggaacggaaaat |
39511571 |
T |
|
| Q |
101 |
tcttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatgga |
154 |
Q |
| |
|
||||| |||||||| |||| ||||| ||||||||| |||| ||||||||||| |
|
|
| T |
39511572 |
ccttgcagtttggtagagagatgaaggaactgatgattgatttgtttctatgga |
39511625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 39580892 - 39581016
Alignment:
| Q |
1 |
aaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaat |
100 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||||| | |||| ||| |||| || |
|
|
| T |
39580892 |
aaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaatat |
39580991 |
T |
|
| Q |
101 |
tcttgctgtttggtaaagaggtgaa |
125 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
39580992 |
aattgctgtttggtagagaggtgaa |
39581016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 39581090 - 39581162
Alignment:
| Q |
190 |
ggtttgattcaccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgt |
262 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||| | || || | ||||||||| ||||||||||||||||| |
|
|
| T |
39581090 |
ggtttgattcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaattgatgaagtatgt |
39581162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 39511781 - 39511832
Alignment:
| Q |
313 |
gaagaagaaaagccagtaaaatgatagagtgttgaattgccattgggagaga |
364 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
39511781 |
gaagaagaaaaattagtaaaatgatagactgttgaattgtcattgggagaga |
39511832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 315
Target Start/End: Original strand, 39581842 - 39581929
Alignment:
| Q |
228 |
acgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgcagtgatgagaattgaagaa |
315 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||| | ||||| | ||||||||| |||| | ||| || | ||||||||||||||||| |
|
|
| T |
39581842 |
acgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtatccaagtgaggcgaactgtaatgatgagaattgaagaa |
39581929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Original strand, 39512162 - 39512199
Alignment:
| Q |
448 |
gaaccaatgaagaatggagtgagataagaggaagactt |
485 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
39512162 |
gaaccaataaagaatggagttagataagaggaagactt |
39512199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 3331569 - 3331422
Alignment:
| Q |
1 |
aaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtacggtagaaaattcgtaggaggattcagaatggaaaat |
100 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||| ||||||||||||| || ||||||||||| | ||| ||| || | ||||||||||||||||| |
|
|
| T |
3331569 |
aaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgggataatagtgaatc--taccaagattcagaatggaaaat |
3331472 |
T |
|
| Q |
101 |
tcttgctgtttggtaaagaggtgaagacactgatgatggattggtttcta |
150 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| || |||| ||||||| |
|
|
| T |
3331471 |
tcttgctctttggtaaagaggtgaaggaactgattattgatttgtttcta |
3331422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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