View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18668_high_7 (Length: 495)

Name: NF18668_high_7
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18668_high_7
NF18668_high_7
[»] chr5 (4 HSPs)
chr5 (33-329)||(6466966-6467264)
chr5 (32-214)||(14196125-14196307)
chr5 (373-475)||(14196335-14196441)
chr5 (379-419)||(6467307-6467347)
[»] chr1 (3 HSPs)
chr1 (64-240)||(34557084-34557260)
chr1 (373-479)||(34557509-34557615)
chr1 (228-329)||(34557371-34557472)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 33 - 329
Target Start/End: Original strand, 6466966 - 6467264
Alignment:
Q  33 taacatatggatatgcattaccatgtatgtaagccacttattttggagtgattgtacatacttgcct--gagtttacataggctaagtgtatgtagcttt 130  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||||||  |||||||||||||||||||||||||||||||    
T  6466966 taacatatggatatgcattaccatgtatgtaagccacttatttttgagtagttgggcatacttgcctttgagtttacataggctaagtgtatgtagcttt 6467065  T
Q  131 ctaatttggcacataattgcaacatctcagatgtggggaagtggttcataggaatcatatgaaattttaactttcattttgtaatgagtttcagtgttgc 230  Q
    |||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  6467066 ctaatttggcacataattgcaacagctcagatgtggcgaaggggtgcataggaatcatatgaaattttaactttcattttgtaacgagttttagttttgc 6467165  T
Q  231 taactgttttaattgtggaggatggtactgtatagagggtagtgaaaatggagtggaatggaaaatttttgattttgactccctaatctagcgcttggt 329  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  6467166 taactgttttaattgtggaggatggtactatatagagggtagtgaaaatggagtggagtggaaaacttttgattttgactccctaatctagcgcttggt 6467264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 32 - 214
Target Start/End: Original strand, 14196125 - 14196307
Alignment:
Q  32 ttaacatatggatatgcattaccatgtatgtaagccacttattttggagtgattgtacatacttgcctgagtttacataggctaagtgtatgtagctttc 131  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||     
T  14196125 ttaatatatgaatatgcattacaatgtatgtaagccacttattttggagtaattgtgcatacttgcctgagtttacataggctaaatgtatgtagctttt 14196224  T
Q  132 taatttggcacataattgcaacatctcagatgtggggaagtggttcataggaatcatatgaaattttaactttcattttgtaa 214  Q
    |||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  14196225 taatttggcacaaaattgcaacagctcagatgtggggaagtggtgcataggaatcatatgaaattttaactttcatttggtaa 14196307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 373 - 475
Target Start/End: Original strand, 14196335 - 14196441
Alignment:
Q  373 atttttctcttggtatgattgaacag----taggaaatgtagatattacaacgaacaaatctataggtaaagcaccatccttcattttcagatcattttc 468  Q
    ||||| ||||||||||||||||| ||    |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  14196335 attttcctcttggtatgattgaatagggattagggaatgtagatattacaacgaacaaaactataggtaaagcgccatccttcattttcatatcattttc 14196434  T
Q  469 accctta 475  Q
    |||||||    
T  14196435 accctta 14196441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 6467307 - 6467347
Alignment:
Q  379 ctcttggtatgattgaacagtaggaaatgtagatattacaa 419  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  6467307 ctcttggtatgattgaacagtagggaatttagatataacaa 6467347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 5e-88; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 34557084 - 34557260
Alignment:
Q  64 agccacttattttggagtgattgtacatacttgcctgagtttacataggctaagtgtatgtagctttctaatttggcacataattgcaacatctcagatg 163  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34557084 agccacttattttggagtaattgtgcatacttgcctgagtttacataggctaagtgtatgtagctttctaatttggcacataattgcaacatctcagatg 34557183  T
Q  164 tggggaagtggttcataggaatcatatgaaattttaactttcattttgtaatgagtttcagtgttgctaactgtttt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34557184 tggggaagtggttcataggaatcatatgaaattttaactttcattttgtaatgagtttcagtgttgctaactttttt 34557260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 373 - 479
Target Start/End: Original strand, 34557509 - 34557615
Alignment:
Q  373 atttttctcttggtatgattgaacagtaggaaatgtagatattacaacgaacaaatctataggtaaagcaccatccttcattttcagatcattttcaccc 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34557509 atttttctcttggtatgattgaacagtaggaaatgtagatattacaacgaacaaatctataggtaaagcaccatccttcattttcagatcattttcaccc 34557608  T
Q  473 ttaaagg 479  Q
    |||||||    
T  34557609 ttaaagg 34557615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 228 - 329
Target Start/End: Original strand, 34557371 - 34557472
Alignment:
Q  228 tgctaactgttttaattgtggaggatggtactgtatagagggtagtgaaaatggagtggaatggaaaatttttgattttgactccctaatctagcgcttg 327  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  34557371 tgctaactgttttaattgtggaggatggtactatatagagggtagtgaaaattgagtggaatggaaaacttttgattttgactccctaatctagcgcttg 34557470  T
Q  328 gt 329  Q
    ||    
T  34557471 gt 34557472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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