View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_high_8 (Length: 434)
Name: NF18668_high_8
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 10335681 - 10336069
Alignment:
| Q |
16 |
atcatgaaaattgtctcactttcttctttctcttcaatggatggctaccacatgtagagagtaaagcgaatataatataacacacttttggattcatttt |
115 |
Q |
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| T |
10335681 |
atcatgaaaattgtctcactttcttctttctcttcaatggatggctaccacatgtagagagtaaagcgaatataatataacacacttttggattcatttt |
10335780 |
T |
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| Q |
116 |
ggagggttcttagcttgaccataactaacaccaagcacatgggggagacaaaatcatgtcattatcttaaaatgtaccaaaaataataataccaacatta |
215 |
Q |
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| T |
10335781 |
ggagggttcttagcttgaccataactaacaccaagcacatgggggagacaaaatcatgtcattatcttaaaatgtaccaaaaataataataccaacatta |
10335880 |
T |
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| Q |
216 |
acaataaggtacatgaaaattttnnnnnnntatgaaaacaaccaaatttctcatccattcatatctaaaaaagatatttagttccttttttatttatagg |
315 |
Q |
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| T |
10335881 |
acaataaggtacatgaaaattttaaaaaaatatgaaaacaaccaaatttctcatccattcatatctaaaaaagatatttagttccttttttatttatagg |
10335980 |
T |
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| Q |
316 |
ttgttgggaaatatgacaaccaaccacaaatgttagaatcataaaagataagttgatggacagcttaagttttaagctcggtattttaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10335981 |
ttgttgggaaatatgacaaccaaccacaaatgttagaatcataaaagataagttgatggacagcttaaattttaagctcggtattttaa |
10336069 |
T |
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