View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18668_low_1 (Length: 1183)

Name: NF18668_low_1
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18668_low_1
NF18668_low_1
[»] chr5 (6 HSPs)
chr5 (11-906)||(6579402-6580296)
chr5 (1053-1168)||(6579141-6579256)
chr5 (934-1026)||(6579283-6579375)
chr5 (944-1023)||(16404582-16404661)
chr5 (945-1022)||(7380120-7380197)
chr5 (957-1023)||(16397988-16398054)
[»] chr8 (2 HSPs)
chr8 (242-384)||(34239579-34239721)
chr8 (448-555)||(34239794-34239901)
[»] chr1 (1 HSPs)
chr1 (958-1007)||(49355087-49355136)
[»] chr4 (2 HSPs)
chr4 (955-1014)||(42292053-42292112)
chr4 (955-1021)||(37040807-37040871)
[»] chr3 (3 HSPs)
chr3 (840-886)||(47609571-47609617)
chr3 (851-886)||(41400236-41400271)
chr3 (958-1023)||(21138829-21138893)
[»] scaffold0018 (1 HSPs)
scaffold0018 (945-1014)||(32131-32200)
[»] chr2 (1 HSPs)
chr2 (952-1014)||(37477172-37477234)


Alignment Details
Target: chr5 (Bit Score: 852; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 852; E-Value: 0
Query Start/End: Original strand, 11 - 906
Target Start/End: Complemental strand, 6580296 - 6579402
Alignment:
Q  11 acatcatcagccttcttgataaagtgttcggaaagtcctgggctagaaactacacttcaacaacattatgcagatcaatatagttattacctttaaattt 110  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6580296 acatcatcagtcttcttgacaaagtgttcggaaagtcctgggctagaaactacacttcaacaacattatgcagatcaatatagttattacctttaaattt 6580197  T
Q  111 ctctgtggtgatggtgggatgaaggaaataataaagaaactttagaaagagtcaaatcaaatataccagacaatcgaattgcttcactttcttacagttc 210  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6580196 ctctgtggtgatggtgggatgaaggaaataataaaggaactttagaaagagtcaaatcaaatataccaaacaatcgaattgcttcactttcttacagttc 6580097  T
Q  211 gtttcattgcacttggttttctcattcgtattacattcttatgcagcaattgaatcaattgatatcccacgtatcctttctcaacaaggtggagaagcag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6580096 gtttcattgcacttggttttctcattcgtattacattcttatgcagcaattgaatcaattgatatcccacgtatcctttctcaacaaggtggagaagcag 6579997  T
Q  311 tgtatcccttaccgcgaattaaagctatagaatttcatccaaaatctaatttggcagcactagtgtttgcagttaagtgccacctttcattatttaaacc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6579996 tgtatcccttaccgcgaattaaagctatagaatttcatccaaaatctaatttggcagcactagtgtttgcagttaagtgccacctttcattatttaaacc 6579897  T
Q  411 atcctggatagttaatatgggatacataaacttgtcctttattacaacagaatgtaacaaatggagatacttcaaaaaacaagaccgaaaacaatagaga 510  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6579896 atcctggatagttaatataggatacataaacttgtcgtttattacaacagaatgtaacaaatggagatacttcaaaaaacaagaccgaaaacaatagaga 6579797  T
Q  511 aaggagaaaacaactttttgcagttttgcaaggagcaaggggatcctcgggtaactacttttatttagctttaaagagccttcaacatttaaggaaattt 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6579796 aaggagaaaacaactttttgcagttttgcaaggagcaaggggatcctcgggtaactacttttatttagctttaaagagccttcaacatttaaggatattt 6579697  T
Q  611 tcttctagaacatataaaatttccacagttttaggtttctagttttgctactatattttcattcatcaacatgatacatataaaatctcaagtttttctg 710  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6579696 tcttctagaacatataaaatttccacagttttaggtttctagttttgctactatattttcatccatcaacatgatacatataaaatctcaagtttttctg 6579597  T
Q  711 tttattttttaatgggacgtcttactgaagtcagccctgatggcctgtggtaaaattgtatgatgttttttctccaccttttgtggatatcttacataat 810  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6579596 tttattttttaatgggacatcttactgaagtcagccctgatggcctgtggtaaaattgtatgatgttttttctccaccttttgtggatatcttacataat 6579497  T
Q  811 gttccatgaaaatggcctattaggggtgttttcctaggctcactttataattttagagtatcttagattttctctttggattatatcttatataac 906  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6579496 gttccatgaaaatggcctattaggggtgttttcctaggctcac-ttataattttagagtatcttagattttctctttggattatatcttatataac 6579402  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 1053 - 1168
Target Start/End: Complemental strand, 6579256 - 6579141
Alignment:
Q  1053 taaaatcccacaacttcaactctgaatacctcatttgtttagtacatattttgctaattacttttgtttactgttgcaggttgtctttcagtttttgtct 1152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6579256 taaaatcccacaacttcaactctgaatacctcatttgtttagtacatattttgctaactacttttgtttactgttgcaggttgtctttcagtttttgtct 6579157  T
Q  1153 tctatcagtatcattc 1168  Q
    ||| ||||||||||||    
T  6579156 tctttcagtatcattc 6579141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 934 - 1026
Target Start/End: Complemental strand, 6579375 - 6579283
Alignment:
Q  934 cttgatttaaatctatgcattcctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattcacgg 1026  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6579375 cttgatttaaatctatgcattcctataaataggggttagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattcacgg 6579283  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 944 - 1023
Target Start/End: Complemental strand, 16404661 - 16404582
Alignment:
Q  944 atctatgcattcctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattca 1023  Q
    ||||||| || || ||||||||||||||||||||||| ||||| ||||||  |||||  ||| || ||||||||||||||    
T  16404661 atctatgtatccccataaatagggattagtatttagtattttgcatcaagctactattcagtcagcatcaataatattca 16404582  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 945 - 1022
Target Start/End: Original strand, 7380120 - 7380197
Alignment:
Q  945 tctatgcattcctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattc 1022  Q
    ||||||||| ||||||||||||||||||| |||||| ||| |||||| || | ||| || | | ||||||||||||||    
T  7380120 tctatgcatccctataaatagggattagtgtttagtctttggtatcaggttagtattaactcattatcaataatattc 7380197  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 957 - 1023
Target Start/End: Complemental strand, 16398054 - 16397988
Alignment:
Q  957 tataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattca 1023  Q
    |||||||||||||||||||||||| ||| | ||||||  |||||  | |||||||||| ||||||||    
T  16398054 tataaatagggattagtatttagtctttgggatcaagctactattcaattagtatcaacaatattca 16397988  T

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Target: chr8 (Bit Score: 87; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 242 - 384
Target Start/End: Original strand, 34239579 - 34239721
Alignment:
Q  242 tacattcttatgcagcaattgaatcaattgatatcccacgtatcctttctcaacaaggtggagaagcagtgtatcccttaccgcgaattaaagctataga 341  Q
    |||||||| |||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||| ||||| || || ||||||||||| |||||    
T  34239579 tacattctgatgcagcaatcgaatcaattgatatccctcgcatcctttctcaacagggtggagaagcagtttatccattgccacgaattaaagcaataga 34239678  T
Q  342 atttcatccaaaatctaatttggcagcactagtgtttgcagtt 384  Q
    ||||||||||||||| ||||| || || |||||||||||||||    
T  34239679 atttcatccaaaatcgaatttagctgccctagtgtttgcagtt 34239721  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 448 - 555
Target Start/End: Original strand, 34239794 - 34239901
Alignment:
Q  448 tttattacaacagaatgtaacaaatggagatacttcaaaaaacaagaccgaaaacaatagagaaaggagaaaacaactttttgcagttttgcaaggagca 547  Q
    |||||| | ||||||||| |||| ||  || ||||||||||| ||| ||  | ||| ||||||| ||||||| ||||||||||| ||||| ||| | |||    
T  34239794 tttatttcgacagaatgtgacaagtgctgaaacttcaaaaaataaggcctcatacagtagagaagggagaaagcaactttttgctgttttacaaagtgca 34239893  T
Q  548 aggggatc 555  Q
    ||||||||    
T  34239894 aggggatc 34239901  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 958 - 1007
Target Start/End: Original strand, 49355087 - 49355136
Alignment:
Q  958 ataaatagggattagtatttagtgttttgtatcaagtcactatcaagtta 1007  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||||||||    
T  49355087 ataaatagggattagtatttagtcttttgtattaagtcaatatcaagtta 49355136  T

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Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 955 - 1014
Target Start/End: Complemental strand, 42292112 - 42292053
Alignment:
Q  955 cctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaa 1014  Q
    ||||||||||||| ||||| |||||| ||||||||| ||||| ||| |||||||||||||    
T  42292112 cctataaataggggttagtttttagtcttttgtatctagtcattattaagttagtatcaa 42292053  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 955 - 1021
Target Start/End: Complemental strand, 37040871 - 37040807
Alignment:
Q  955 cctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatatt 1021  Q
    ||||||||||| ||||||| |||||| ||||||||||||| | ||||||  || |||||||||||||    
T  37040871 cctataaatagagattagtgtttagtcttttgtatcaagttagtatcaa--tattatcaataatatt 37040807  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 840 - 886
Target Start/End: Complemental strand, 47609617 - 47609571
Alignment:
Q  840 tttcctaggctcactttataattttagagtatcttagattttctctt 886  Q
    ||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  47609617 tttcctaggatcaatttataattttagagtatcttagattatctctt 47609571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 851 - 886
Target Start/End: Original strand, 41400236 - 41400271
Alignment:
Q  851 cactttataattttagagtatcttagattttctctt 886  Q
    ||||||||||||||||||||||||||||| ||||||    
T  41400236 cactttataattttagagtatcttagattatctctt 41400271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 958 - 1023
Target Start/End: Complemental strand, 21138893 - 21138829
Alignment:
Q  958 ataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattca 1023  Q
    |||||||||||||||| || ||| ||||||||||||||  |||||||||| || ||||| ||||||    
T  21138893 ataaatagggattagt-ttcagtcttttgtatcaagtctgtatcaagttattaacaatagtattca 21138829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 945 - 1014
Target Start/End: Original strand, 32131 - 32200
Alignment:
Q  945 tctatgcattcctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaa 1014  Q
    |||||| || |||||||||||||||||||||| ||| |||||||||||   |||||||||| | ||||||    
T  32131 tctatgtatccctataaatagggattagtattcagttttttgtatcaacctactatcaagtcattatcaa 32200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 952 - 1014
Target Start/End: Complemental strand, 37477234 - 37477172
Alignment:
Q  952 attcctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaa 1014  Q
    ||||||||||||||| ||  ||||||||| |||||||| |||  |||||| ||||||||||||    
T  37477234 attcctataaataggaatatgtatttagtcttttgtattaagctactatccagttagtatcaa 37477172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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