View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_low_11 (Length: 420)
Name: NF18668_low_11
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 6 - 406
Target Start/End: Complemental strand, 48566550 - 48566145
Alignment:
| Q |
6 |
agtgagaagaaaaaagagatataaagttattataaatataaaagttggtttgagtttttcttcattgcaacttgagtctttggatgcattggagttttag |
105 |
Q |
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| T |
48566550 |
agtgaaaagaaaaaagagatataaagttattataaatatagaagttggtttgagtttttcttcattgcaacttgagtctttggattcattggagttttag |
48566451 |
T |
|
| Q |
106 |
gtaattgtatgttatgaaaggtttttcaattctttcgtgcaaaaattataattgagagtttataattttgcctctacaaacattgtatgagattgtaagt |
205 |
Q |
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| T |
48566450 |
gtaattgtatgttatgaaaggtttttcaattctttcgtgcaaaaattataattgagagtttataattttgcctctacaaacattgtatgagattgtaagt |
48566351 |
T |
|
| Q |
206 |
tgttttcatg-----ttttgcttatgtgaatgtaattttgcttttgtgaaaattttctctcaataatttcaaaaactaactcaaaatatgaaggtgttca |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48566350 |
tgttttcatgtttgattttgcttatgtgaatgtaattttgctattgtgaaaattttctctcaataatttcaaaaactaactcaaaatatgaaggtgttca |
48566251 |
T |
|
| Q |
301 |
aatatattaatacatccaacaacttaaaaatctaagcaatgtgacatttcaattcaacttcattacaactcggtctaactttataaatctagtttgtttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48566250 |
aatatattaatacatccaacaacttaaaaatctaagcaatgtgacatttcaattcaacttcagtacaactcggtctaactttataaatctagtttgtttt |
48566151 |
T |
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| Q |
401 |
ttatgt |
406 |
Q |
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|||||| |
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| T |
48566150 |
ttatgt |
48566145 |
T |
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