View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_low_14 (Length: 408)
Name: NF18668_low_14
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 25581974 - 25581709
Alignment:
| Q |
20 |
aagtccagcaatgacaatgatgggcagtgtgaaagnnnnnnnntcaccatagtagaatcaccttcatatcttt-agattaattgttatgccctaactacg |
118 |
Q |
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| T |
25581974 |
aagtccagcaatgacaatgatgggcagtgtgaaa----aaaaatcaccatagtaggatcaccttcatatcttttagattaattgttatgcactaactacg |
25581879 |
T |
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| Q |
119 |
tcaannnnnnn-atgcatacattcaatcaaatcatgttaaaaagatgaagttagctctcaaaacatttccacaaannnnnnnacatgataaaatttaatt |
217 |
Q |
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| T |
25581878 |
tcaattttttgtacgcatacattcaattaaatcacgttaaaaagatgaagttagttctcaaaacatatccacaaattttt--acatggtaaaatttaatt |
25581781 |
T |
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| Q |
218 |
gaaaattatttactattgtatctgatctataatatagaccaaatacatcagttttgagttatcctattattg |
289 |
Q |
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| T |
25581780 |
gaaaattatttactattgtatcttatctataatatagaccaaatacatcagttttgagttatcctactattg |
25581709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 25581707 - 25581630
Alignment:
| Q |
331 |
tttccccttgcctataaggataactgaaaacacaaagacacagtttgaagaccaagctgttataagttacaatcatga |
408 |
Q |
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| T |
25581707 |
tttccccttgcctataaggataactgaaaacacaaagacacagtttgaagaccaagctgttataagttacaatcatga |
25581630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 15969129 - 15969163
Alignment:
| Q |
236 |
tatctgatctataatatagaccaaatacatcagtt |
270 |
Q |
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| T |
15969129 |
tatctgatctataatatagaccatatacatcagtt |
15969163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 1891362 - 1891326
Alignment:
| Q |
234 |
tgtatctgatctataatatagaccaaatacatcagtt |
270 |
Q |
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| T |
1891362 |
tgtatctgatctatcatatagaccagatacatcagtt |
1891326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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