View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18668_low_16 (Length: 377)
Name: NF18668_low_16
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 29 - 367
Target Start/End: Original strand, 28058918 - 28059257
Alignment:
| Q |
29 |
ttttcataaatgttcataaaatttgacaggatctcaactaattaatgactacaaaaagaa-tatatacaaaatttaacattgtaagaatgattgcagagt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28058918 |
ttttcataaatgttcataaaatttgacaggatctcaactaattaatgactacaaaaagaaatatatacaaaatttaactttgtaagaatgattgcagagt |
28059017 |
T |
|
| Q |
128 |
taaacaaacaaaagcagcaacaatcatcaaacatatacttcattaatgatttttaagatcaaacacctacatctatccatagttgtcccaccaaaacttc |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28059018 |
taaacaaacaaaagcagcaacaatcatgaaacatatacttcattaatgatttttaagatcaaacacctacatctatccatagttgtcccaccaaaacttc |
28059117 |
T |
|
| Q |
228 |
catcaatgatcaaaatgaaaatgacaaacaacttctccagcccagtaatatcacatggatccttccggtcttgtttaataacgtctctatagcgttatag |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28059118 |
catcaatgatcaaaatgaaaatgacaaacaacttctccagcccagtaatatcacatggatccttccggtcttgtttaataacgtctctatagcgttatag |
28059217 |
T |
|
| Q |
328 |
gcaatgtagaggaatatgatcaaatcgatattgttctgtg |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28059218 |
gcaatgtagaggaatatgatcaaatcgatattgttctgtg |
28059257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 28067387 - 28067443
Alignment:
| Q |
217 |
accaaaacttccatcaatgatcaaaatgaaaatgacaaacaacttctccagcccagt |
273 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||| |||| ||||||||||||| |
|
|
| T |
28067387 |
accaaaacttccatcaatgaccaaaagaaaaatcacaatcaacatctccagcccagt |
28067443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University