View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_low_18 (Length: 354)
Name: NF18668_low_18
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 1197889 - 1197761
Alignment:
| Q |
16 |
attaataaataaggatataaaactaattatatgtgtagagacgaatttagagacatgatgtgtttgaggtagaaatttccttcactaaccacattctcta |
115 |
Q |
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| T |
1197889 |
attaataaataaggatataaaattaattatatatgtagagacgaatttatggacgggatatgtttgaggtagaaatttccttctctcactatagtctcta |
1197790 |
T |
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| Q |
116 |
atacatatatttcaaaatatgtcctttag |
144 |
Q |
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| T |
1197789 |
atacatatatttcaaaatatgtcctttag |
1197761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 1197381 - 1197301
Alignment:
| Q |
147 |
tttttattcgtctccaattacatctctattcttagatcaagataatagagcatgttaacgaacttggatcccgaggttttgg |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1197381 |
tttttattcgtctccaattacatctctattcttagatcaagat-atagagcatgttaacgaacttggatcccgaggttttgg |
1197301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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