View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18668_low_19 (Length: 349)

Name: NF18668_low_19
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18668_low_19
NF18668_low_19
[»] chr2 (5 HSPs)
chr2 (17-341)||(34562822-34563146)
chr2 (148-339)||(34571777-34571968)
chr2 (17-247)||(34579081-34579314)
chr2 (17-247)||(34584830-34585063)
chr2 (17-117)||(34571613-34571713)
[»] chr8 (8 HSPs)
chr8 (17-233)||(41943686-41943905)
chr8 (17-235)||(25865440-25865661)
chr8 (158-230)||(26591913-26591985)
chr8 (25-106)||(44343873-44343956)
chr8 (26-105)||(43479850-43479929)
chr8 (182-228)||(38799242-38799288)
chr8 (182-228)||(38822229-38822275)
chr8 (185-229)||(43480012-43480056)
[»] chr4 (1 HSPs)
chr4 (172-232)||(24860289-24860349)
[»] chr1 (1 HSPs)
chr1 (17-81)||(7594426-7594490)
[»] chr5 (2 HSPs)
chr5 (172-228)||(12531239-12531295)
chr5 (172-228)||(12547324-12547380)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 34562822 - 34563146
Alignment:
Q  17 acaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacgacgag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34562822 acaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacgacgag 34562921  T
Q  117 gtctcttaagtccgccctttggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtggatttgcgagcagtttgctt 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34562922 gtctcttaagtcctccctttggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtggatttgcgagcagtttgctt 34563021  T
Q  217 tgtacgcgccattgaatcgaagatagaagaaaactgctttggttttgaaagtgtcttgaaagnnnnnnnttgtaatgagaatagtgaatgaaatgaaaca 316  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  34563022 tgtacgcgccattgaatcaaaaatagaagaaaactgctttggttttgaaagtgtcttgaaagaaaaaaattgtaatgagaatagtgaatgaaatgaaaca 34563121  T
Q  317 tttatatagagatggaatgatgatg 341  Q
    |||||||||| |||| |||||||||    
T  34563122 tttatatagaaatggtatgatgatg 34563146  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 34571777 - 34571968
Alignment:
Q  148 acgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattgaatcgaagatagaagaa 247  Q
    |||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34571777 acgagcaacctttgtggcgagttccttccttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattgaatcgaaaatagaagaa 34571876  T
Q  248 aactgctttggttttgaaagtgtcttgaaagnnnnnnnttgtaatgagaatagtgaatgaaatgaaacatttatatagagatggaatgatga 339  Q
    |||||||||||||||||||||||||||||||       ||||||| ||||| ||||||||||||||| ||||||||||   |||||||||||    
T  34571877 aactgctttggttttgaaagtgtcttgaaaggaaaaaattgtaataagaattgtgaatgaaatgaaagatttatataggagtggaatgatga 34571968  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 34579081 - 34579314
Alignment:
Q  17 acaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacgacgag 116  Q
    |||||||||||||||||||| ||||| |||||||| |||| || |||||| || ||||||||||| |||||||||||||||||||||||| ||||| |||    
T  34579081 acaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacgaagagcaactgttccaggacgataacgatgag 34579180  T
Q  117 gtctcttaagtccgcc---ctttggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtggatttgcgagcagtttg 213  Q
    |  |||| | ||||||     ||||   | | || ||||||  ||||||||||||   |||| |||||||||| |||  ||||||| |||||||||||||    
T  34579181 gcttcttgattccgccggttgttggcacagattttcgagcagcctttgtggcgagttgcttccttggtgccttaccaagggtggatctgcgagcagtttg 34579280  T
Q  214 ctttgtacgcgccattgaatcgaagatagaagaa 247  Q
    |||||||||||||||||||||||| | |||||||    
T  34579281 ctttgtacgcgccattgaatcgaaaaaagaagaa 34579314  T

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Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 34584830 - 34585063
Alignment:
Q  17 acaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacgacgag 116  Q
    |||||||||||||||||||| ||||| |||||||| |||| || |||||| || ||||||||||| |||||||||||||||||||||||| ||||| |||    
T  34584830 acaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacgaagagcaactgttccaggacgataacgatgag 34584929  T
Q  117 gtctcttaagtccgcc---ctttggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtggatttgcgagcagtttg 213  Q
    |  |||| | ||||||     ||||   | | || ||||||  ||||||||||||   |||| |||||||||| |||  ||||||| |||||||||||||    
T  34584930 gcttcttgattccgccggttgttggcacagattttcgagcagcctttgtggcgagttgcttccttggtgccttaccaagggtggatctgcgagcagtttg 34585029  T
Q  214 ctttgtacgcgccattgaatcgaagatagaagaa 247  Q
    |||||||||||||||||||||||| | |||||||    
T  34585030 ctttgtacgcgccattgaatcgaaaaaagaagaa 34585063  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 34571613 - 34571713
Alignment:
Q  17 acaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacgacgag 116  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||||||| || ||||||||||| |||||||||||||||||   |||||||||| |||    
T  34571613 acaagacgctggaatggaagtttacggatcaaaagttcggtactcttctgatacttacgtatctcacgaagagcaactgttccgcaacgaaaacgatgag 34571712  T
Q  117 g 117  Q
    |    
T  34571713 g 34571713  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 41943905 - 41943686
Alignment:
Q  17 acaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacgacgag 116  Q
    |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||| ||||| || ||||||||| | ||| |||    
T  41943905 acaagacgttggaatggaagcttacggatcaaaagatcagtactcttctggtatttacggatctcacgaagtgcaacggtaccaggacgatagcgatgag 41943806  T
Q  117 gtctcttaagtccgcccttt---ggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtggatttgcgagcagtttg 213  Q
    || |||| | ||| ||  ||   ||   | | || ||||||  ||| ||||| ||   |||| |||| ||||||||||||||||||||||||||||||||    
T  41943805 gtttcttgactccaccggttgtaggagcagatttgcgagcagccttggtggccagttgcttccttggagccttgccaccggtggatttgcgagcagtttg 41943706  T
Q  214 ctttgtacgcgccattgaat 233  Q
    ||| ||||| ||||||||||    
T  41943705 cttagtacgagccattgaat 41943686  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 25865661 - 25865440
Alignment:
Q  17 acaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacgacgag 116  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||||| || ||||| ||||| ||||||||||| |||||||||||| ||||| |||    
T  25865661 acaagacgctggaatggaagcttacggatcaaaagctcagtactcttctgatacttacggatctcacgaagagcaacggttccaggacgataacgatgag 25865562  T
Q  117 gtctcttaagtccgcc---ctttggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtggatttgcgagcagtttg 213  Q
    |  |||| | ||||||     ||||   | | || |  |||   || || |||||   |||| ||||||||||||| |||||||||||||||||||||||    
T  25865561 gcttcttcactccgccggtggttggagcagatttccttgcagctttggtcgcgagttgcttccttggtgccttgccgccggtggatttgcgagcagtttg 25865462  T
Q  214 ctttgtacgcgccattgaatcg 235  Q
    ||| ||||| ||||||||||||    
T  25865461 cttcgtacgagccattgaatcg 25865440  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 26591985 - 26591913
Alignment:
Q  158 tttgtggcgagcaccttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattg 230  Q
    ||||| ||||||  |||| ||||||| ||||| |||||||| ||||| ||||||||||| ||||| |||||||    
T  26591985 tttgttgcgagctgcttccttggtgctttgccgccggtggacttgcgtgcagtttgcttagtacgtgccattg 26591913  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 44343956 - 44343873
Alignment:
Q  25 ctggaatggaagcttacggatcaaaagatcggaactcttctggtatttac--gtatctcgcgaagagcaactgttccaggacga 106  Q
    |||||| |||||||||||||||||||| | || ||||||||| || ||||   | |||| ||||||||||| ||||||||||||    
T  44343956 ctggaagggaagcttacggatcaaaagtttggtactcttctgatacttacagatctctcacgaagagcaacggttccaggacga 44343873  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 43479850 - 43479929
Alignment:
Q  26 tggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacg 105  Q
    |||||||||||||| | ||| | ||| |||| ||||||||| || || || ||||| ||||||||||| |||||||||||    
T  43479850 tggaatggaagcttcctgatgagaagctcggtactcttctgatacttgcggatctcacgaagagcaacagttccaggacg 43479929  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 38799288 - 38799242
Alignment:
Q  182 gccttgccaccggtggatttgcgagcagtttgctttgtacgcgccat 228  Q
    |||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  38799288 gccttgccgccggtggatttgcgagctgtttgcttggtacgtgccat 38799242  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 38822229 - 38822275
Alignment:
Q  182 gccttgccaccggtggatttgcgagcagtttgctttgtacgcgccat 228  Q
    |||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  38822229 gccttgccgccggtggatttgcgagctgtttgcttggtacgtgccat 38822275  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 43480012 - 43480056
Alignment:
Q  185 ttgccaccggtggatttgcgagcagtttgctttgtacgcgccatt 229  Q
    ||||||||||||||||||||||| ||||| || ||||| ||||||    
T  43480012 ttgccaccggtggatttgcgagcggtttgtttggtacgagccatt 43480056  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 24860349 - 24860289
Alignment:
Q  172 cttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattgaa 232  Q
    |||| ||||||| || || ||||||||||||||||| |||||||||||||| |||||||||    
T  24860349 cttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattgaa 24860289  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 7594426 - 7594490
Alignment:
Q  17 acaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctc 81  Q
    ||||||||||| ||||||||||| ||||||||||| || | |||||||||||| ||||| |||||    
T  7594426 acaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctc 7594490  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 12531295 - 12531239
Alignment:
Q  172 cttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccat 228  Q
    |||| ||||||| || || ||||||||||||||||| |||||||| ||||| |||||    
T  12531295 cttccttggtgcttttccgccggtggatttgcgagctgtttgcttggtacgagccat 12531239  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 12547324 - 12547380
Alignment:
Q  172 cttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccat 228  Q
    |||| ||||||| || || ||||||||||||||||| |||||||| ||||| |||||    
T  12547324 cttccttggtgcttttccgccggtggatttgcgagctgtttgcttggtacgagccat 12547380  T

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