View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18668_low_2 (Length: 765)

Name: NF18668_low_2
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18668_low_2
NF18668_low_2
[»] chr3 (2 HSPs)
chr3 (60-566)||(54412845-54413350)
chr3 (8-45)||(54413374-54413411)
[»] chr8 (1 HSPs)
chr8 (573-612)||(9370108-9370147)
[»] chr7 (1 HSPs)
chr7 (573-612)||(47817426-47817465)
[»] chr4 (2 HSPs)
chr4 (573-612)||(23669252-23669291)
chr4 (579-608)||(50123934-50123963)
[»] chr1 (2 HSPs)
chr1 (566-605)||(1670199-1670238)
chr1 (567-605)||(6815255-6815293)


Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 60 - 566
Target Start/End: Complemental strand, 54413350 - 54412845
Alignment:
Q  60 taggtatgccaaactaaaaatattccaatataatgctcagtttgattaacgatagcccaaggtcgacaaaagtaaattcaatgtcttccaaaaagtaaat 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54413350 taggtatgccaaactaaaaatattccaatataatgctcagtttgattaacgatagcccaaggtcgacaaaagtaaattcaatgtcttccaaaaagtaaat 54413251  T
Q  160 taaatgtaaaatatgatatttcttatacggaattatacaacgttactttctgtgtaatgtatactataacgccttaatattgtataacttatggttaaan 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  54413250 taaatgtaaaatatgatatttcttatacggaattatacaacgttactttctgtgtaatgtatactataacgccttgatattgtataacttatggttaaat 54413151  T
Q  260 nnnnnnnnnnnnaccaactaacggattaaaaataatagaaatttagatatttgttcacaatgattaagctccacagggaccgagggatctacggatatag 359  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54413150 tttttattttttaccaactaacggattaaaaataatagaaatttagatatttgttcacaatgattaagctccacagggaccgagggatctaaggatatag 54413051  T
Q  360 ggatggaggaaaaactctgaggacgaggaataatttgagtgacgggacaaggagcggaaaagtactctttgtccccgctccgccgcattgacatctataa 459  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54413050 ggatggaggaaaaactctgaggacgaggaataatttgagtgatgggacaaggagcggaaaagtactctttgtccccgctccgccgcattgacatctataa 54412951  T
Q  460 ccgacacatattttacatgtttaatttatagaatctaaaatataatcatgataatgaattttattggcgtttacaactcgtctcgtgggagtttgtaatt 559  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   | | ||||||||| ||||||||||||||||||||||||    
T  54412950 ccgacacatattttacatgtttaatttatagaatctaaaatat-atcatgataatgaatcccaatagcgtttacatctcgtctcgtgggagtttgtaatt 54412852  T
Q  560 gtttgga 566  Q
    |||||||    
T  54412851 gtttgga 54412845  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 54413411 - 54413374
Alignment:
Q  8 tgtccaagaatattatcctattgttcgtgtgaatacac 45  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  54413411 tgtccatgaatattatcctattgttcgtttgaatacac 54413374  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 612
Target Start/End: Complemental strand, 9370147 - 9370108
Alignment:
Q  573 gtctaaggtgggagaccttaataggtctcctacggtgcat 612  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  9370147 gtctagggtgggagaccttaataggtctcctacggtgcat 9370108  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 612
Target Start/End: Original strand, 47817426 - 47817465
Alignment:
Q  573 gtctaaggtgggagaccttaataggtctcctacggtgcat 612  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  47817426 gtctagggtgggagaccttaataggtctcctacggtgcat 47817465  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 612
Target Start/End: Complemental strand, 23669291 - 23669252
Alignment:
Q  573 gtctaaggtgggagaccttaataggtctcctacggtgcat 612  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  23669291 gtctagggtgggagaccttaataggtctcctacggtgcat 23669252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 608
Target Start/End: Original strand, 50123934 - 50123963
Alignment:
Q  579 ggtgggagaccttaataggtctcctacggt 608  Q
    ||||||||||||||||||||||||||||||    
T  50123934 ggtgggagaccttaataggtctcctacggt 50123963  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 566 - 605
Target Start/End: Original strand, 1670199 - 1670238
Alignment:
Q  566 aggctcagtctaaggtgggagaccttaataggtctcctac 605  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  1670199 aggctcagtctaaggtgggagaccttgataggtctcctac 1670238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 567 - 605
Target Start/End: Original strand, 6815255 - 6815293
Alignment:
Q  567 ggctcagtctaaggtgggagaccttaataggtctcctac 605  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  6815255 ggctcagtctagggtgggagaccttgataggtctcctac 6815293  T

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