View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18668_low_22 (Length: 341)

Name: NF18668_low_22
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18668_low_22
NF18668_low_22
[»] chr2 (2 HSPs)
chr2 (1-321)||(8020816-8021136)
chr2 (119-199)||(22791940-22792020)
[»] chr3 (27 HSPs)
chr3 (7-323)||(28151632-28151949)
chr3 (1-284)||(17744330-17744615)
chr3 (1-284)||(19045650-19045935)
chr3 (9-321)||(28037423-28037737)
chr3 (7-285)||(8539098-8539381)
chr3 (62-321)||(11420972-11421232)
chr3 (61-303)||(27458741-27458981)
chr3 (119-302)||(28149970-28150155)
chr3 (119-256)||(28161925-28162064)
chr3 (99-256)||(28185968-28186127)
chr3 (12-133)||(11421393-11421514)
chr3 (160-285)||(27954347-27954471)
chr3 (116-285)||(27920262-27920435)
chr3 (193-302)||(27776525-27776634)
chr3 (99-237)||(28479797-28479937)
chr3 (99-237)||(28508980-28509120)
chr3 (7-53)||(27430824-27430870)
chr3 (34-130)||(26139089-26139185)
chr3 (34-133)||(28162792-28162891)
chr3 (34-135)||(26110202-26110303)
chr3 (30-135)||(26127278-26127383)
chr3 (237-302)||(28056547-28056612)
chr3 (237-302)||(28066972-28067037)
chr3 (8-52)||(18076983-18077027)
chr3 (7-49)||(27920463-27920505)
chr3 (30-135)||(26177328-26177433)
chr3 (34-106)||(26204494-26204566)
[»] scaffold0257 (1 HSPs)
scaffold0257 (107-303)||(19079-19277)
[»] scaffold0922 (1 HSPs)
scaffold0922 (7-226)||(1819-2038)
[»] scaffold1142 (1 HSPs)
scaffold1142 (44-135)||(530-621)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 8021136 - 8020816
Alignment:
Q  1 agtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021136 agtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatctt 8021037  T
Q  101 actttcatgacatcgtcatcatttagagaaactgagaaaaggtgagaaagaagaaggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8021036 actttcatgacatcgtcatcatttagagaaactgagaaaaggtgggaaagaagaaggttaacttcaaaatgaaaagggcgatgagataacttaagaaaag 8020937  T
Q  201 aaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020936 aaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttat 8020837  T
Q  301 ggcgattgaagtagaagctat 321  Q
    |||||||||||||||||||||    
T  8020836 ggcgattgaagtagaagctat 8020816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 22792020 - 22791940
Alignment:
Q  119 tcatttagagaaactgagaaaaggtgagaaagaaga-aggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaa 199  Q
    ||||||||||||||||| || ||  |||| |||||| || ||||||||||||| |||||||  |||||||||| ||||||||    
T  22792020 tcatttagagaaactga-aatagtggagagagaagagagtttaacttcaaaatcaaaagggttatgaggtaacataagaaaa 22791940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 28151949 - 28151632
Alignment:
Q  7 ctttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttc 106  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||| ||||| | |||||| | |||| ||||||| ||| |||||    
T  28151949 ctttgaaggaaactgagatgcaatagaagagggtcttgatttggaaactaatatgttatcatcctttgaaaactgatcctcagtatttgagcttgctttc 28151850  T
Q  107 atgacatcgtcatcatttagagaaactgagaaaaggtgagaaagaaga-aggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaac 205  Q
    |||||||  |||||||||||||||||||| ||||| || |||| |||| || | ||||||||||| |||||||||||||||||||||||||||| ||||     
T  28151849 atgacattatcatcatttagagaaactgacaaaagatgggaaacaagagagctaaacttcaaaataaaaagggcgatgaggtaacttaagaaaataaaag 28151750  T
Q  206 cgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcga 305  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |    
T  28151749 cgatccaaagattcttcaccttgatcatcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttacaggctttgttatgtcaa 28151650  T
Q  306 ttgaagtagaagctattg 323  Q
    ||| |||| |||||||||    
T  28151649 ttggagtataagctattg 28151632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 17744330 - 17744615
Alignment:
Q  1 agtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatctt 100  Q
    ||||| |||||||||| |||| ||| ||||| |||| ||| ||||||||||||||||||||||||| |  || ||||| || | |||||||||||| |||    
T  17744330 agtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatatttcatcatttttaggaaattgatcctcaatatttgagctt 17744429  T
Q  101 actttcatgacatcgtcatcatttagagaaactg-agaaaaggtgagaaagaagaaggtt-aacttcaaaatgaaaagggcgatgaggtaacttaagaaa 198  Q
    |||||||  ||||| ||||||||||||||||||| | ||| ||||||||||||||  ||| ||||||||||||||||| |||||||||||||||||||||    
T  17744430 actttcacaacatcatcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttcaaaatgaaaagagcgatgaggtaacttaagaaa 17744529  T
Q  199 agaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtgg 284  Q
    | |||| ||||||||||||| || |||| | || |||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  17744530 ataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccagatttcaacatcaacatcttgagtgg 17744615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 19045650 - 19045935
Alignment:
Q  1 agtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatctt 100  Q
    ||||| |||||||||| |||| ||| ||||| |||| ||| ||||||||||||||||||||||||| |  || ||||| || | |||||||||||| |||    
T  19045650 agtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatatttcatcatttttaggaaattgatcctcaatatttgagctt 19045749  T
Q  101 actttcatgacatcgtcatcatttagagaaactg-agaaaaggtgagaaagaagaaggtt-aacttcaaaatgaaaagggcgatgaggtaacttaagaaa 198  Q
    |||||||  ||||| ||||||||||||||||||| | ||| ||||||||||||||  ||| ||||||||||||||||| |||||||||||||||||||||    
T  19045750 actttcacaacatcatcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttcaaaatgaaaagagcgatgaggtaacttaagaaa 19045849  T
Q  199 agaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtgg 284  Q
    | |||| ||||||||||||| || |||| | || |||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  19045850 ataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccagatttcaacatcaacatcttgagtgg 19045935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 28037737 - 28037423
Alignment:
Q  9 ttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcat 108  Q
    |||||||| | |||||| ||||||||||||||||||||||||||||||| || ||||| ||||| | |||||| | |||||||||||| |||||||||||    
T  28037737 ttgaaggaaaatgagatgcaatagaagagggtcttgatttggaaactaacatgtcatcatccttagaaaactgatcctcaatatttgaacttactttcat 28037638  T
Q  109 gacatcgtcatcatttagagaaactgagaa-aaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaacc 206  Q
    |||||  ||||||||| || |||||||  | ||||||  |||||||   ||||| ||||||||||||||||| ||||||||||||| |||||| || ||     
T  28037637 gacattatcatcatttggataaactgaacagaaggtggaaaagaagcgagttaaacttcaaaatgaaaagggtgatgaggtaactttagaaaataacact 28037538  T
Q  207 gatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcgat 306  Q
    |||||||||| |||| |||| || | ||||||||||||||||||||  ||||| |||  | ||||||||||| |||||| | ||||||||||||||  ||    
T  28037537 gatccaaagagtctttaccttgaccatcattagtgttactagtttcgcgccagtttttgagatcaacatcttcagtggtaacaggctttgttatggtaat 28037438  T
Q  307 tgaagtagaagctat 321  Q
    ||||| |||||||||    
T  28037437 tgaaggagaagctat 28037423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 8539098 - 8539381
Alignment:
Q  7 ctttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttc 106  Q
    |||||||||| ||||||||  |||| ||||| ||||||||||||||||||||||||| || ||||| |||||||  | || ||||||||| |||||||||    
T  8539098 ctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatatttcttcatccttaggaaactcattctgaatatttgagcttactttc 8539197  T
Q  107 atgacatcgtcatcatttagagaaactg-agaaaaggtgagaaagaaga-aggttaacttc---aaaatgaaaagggcgatgaggtaacttaagaaaaga 201  Q
    ||| || | |||||||||||| || ||| | ||| |||| ||||||||| || | ||||||   ||||||||||||| ||  |||||||||||||||| |    
T  8539198 atggcaacatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaata 8539297  T
Q  202 aaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggt 285  Q
    |||| ||||||| |||||||||||| |||    |||||||||||||||||||||||| | || |||||||||||||||||||||    
T  8539298 aaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggt 8539381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 62 - 321
Target Start/End: Complemental strand, 11421232 - 11420972
Alignment:
Q  62 tcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactgagaaaaggtgagaaagaagaaggtt-a 160  Q
    ||||| ||||| || || ||||||||||||||||  ||| ||||||||||| | ||||||||||||| |||||| |||  ||| |||||||||  ||| |    
T  11421232 tcatcatccttaggtaaatgttgctcaatatttgtgcttgctttcatgacagcatcatcatttagagcaactgacaaacagtgggaaagaagagagttca 11421133  T
Q  161 acttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccaga 260  Q
    ||||| |||||||||||| ||||  |||||||||||||| ||||| |||||||||| || |||||| |||| |||||||  |||||||||||||| ||||    
T  11421132 acttctaaatgaaaagggtgatgtcgtaacttaagaaaataaaactgatccaaagagtcatcaccttgatcatcattagccttactagtttcctgacaga 11421033  T
Q  261 tttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctat 321  Q
    ||| |||||||||||||||| ||||   ||||||||||||||| |||  || |||||||||    
T  11421032 ttttaacatcaacatcttgaatggtagcaggctttgttatggcaatttgaggagaagctat 11420972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 61 - 303
Target Start/End: Original strand, 27458741 - 27458981
Alignment:
Q  61 ttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactgag-aaaaggtgagaaagaagaaggtt 159  Q
    |||||| || || |||||||| | |||||||||||| |||||||| |||||| | ||||||||||||||||||||  |||| ||   |||||||| ||||    
T  27458741 ttcatcatcgttaggaaactgattctcaatatttgagcttacttttatgacagcatcatcatttagagaaactgaacaaaaagttgcaaagaagagggtt 27458840  T
Q  160 aa-cttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgcca 258  Q
    || ||||||||||||||||| ||| || |||||    || |  | |  |||||||||| ||||||||| |||| || ||||| || ||||||||||||||    
T  27458841 aaacttcaaaatgaaaagggtgataagataact----aatatcagattgatccaaagagtcttcaccttgatcatccttagtcttgctagtttcctgcca 27458936  T
Q  259 gatttcaacatcaacatcttgagtggttagaggctttgttatggc 303  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||    
T  27458937 gattttaacatcaacatcttgagtggtaagaggctttgttatggc 27458981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 119 - 302
Target Start/End: Complemental strand, 28150155 - 28149970
Alignment:
Q  119 tcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaaga 216  Q
    |||||||||||||||||  |||||||| || ||||||   |||| ||||||||||||||||| |||||| ||||||||||||| ||||  ||||| ||||    
T  28150155 tcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatcctaaga 28150056  T
Q  217 ttcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 302  Q
     ||||||||| |||| |||||||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28150055 ctcttcaccttgatcatcattagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28149970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 256
Target Start/End: Complemental strand, 28162064 - 28161925
Alignment:
Q  119 tcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaaga 216  Q
    |||||||||||||||||  |||||||| || ||||||   |||| ||||||||||||||||| |||||| ||||||||||||| ||||  ||||||||||    
T  28162064 tcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaaga 28161965  T
Q  217 ttcttcacctcgatcgtcattagtgttactagtttcctgc 256  Q
     ||||||||| |||| ||||||||||||||||||||||||    
T  28161964 gtcttcaccttgatcatcattagtgttactagtttcctgc 28161925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 256
Target Start/End: Complemental strand, 28186127 - 28185968
Alignment:
Q  99 ttactttcatgacatcgtcatcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaaga 196  Q
    ||||||| || ||| | ||||||||||||||||||||  |||||||| || ||||||   |||| ||||||||||||||||| |||||| ||||||||||    
T  28186127 ttacttttataacagcatcatcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttcaaaatgaaaagggtgatgagataacttaaga 28186028  T
Q  197 aaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc 256  Q
    ||| ||||  |||||||||| ||||||||| |||| |||| |||||||||||||||||||    
T  28186027 aaataaaattgatccaaagagtcttcaccttgatcatcatcagtgttactagtttcctgc 28185968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 11421514 - 11421393
Alignment:
Q  12 aaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgac 111  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||| ||| | |||||||||| |||| ||||||||||||||||| |||     
T  11421514 aaggatactgagatgcaatataagagggtcttgatttggaaactaatatatcatcatccgtaggaaactgttcctcagtatttgatcttactttcttgaa 11421415  T
Q  112 atcgtcatcatttagagaaact 133  Q
    | | ||||||||| ||||||||    
T  11421414 agcatcatcatttcgagaaact 11421393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 160 - 285
Target Start/End: Complemental strand, 27954471 - 27954347
Alignment:
Q  160 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 259  Q
    ||||||||||||||||||  |||||||||||||| ||||| || ||  ||||||||| | ||||||| |||| |||||||||||||||||||||||||||    
T  27954471 aacttcaaaatgaaaaggt-gatgaggtaacttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgttactagtttcctgccag 27954373  T
Q  260 atttcaacatcaacatcttgagtggt 285  Q
    |||| | ||||||||| |||||||||    
T  27954372 attttatcatcaacatattgagtggt 27954347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 116 - 285
Target Start/End: Complemental strand, 27920435 - 27920262
Alignment:
Q  116 tcatcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaa---cttaagaaaagaaaaccgatc 210  Q
    |||||||||||||||||||   |||||||| |||||||||  ||||| ||||||||||||||||  ||||||||||   |||| ||||| || ||  |||    
T  27920435 tcatcatttagagaaactgtccaaaaggtgggaaagaagagagttaaacttcaaaatgaaaaggt-gatgaggtaattgcttatgaaaacaacactaatc 27920337  T
Q  211 caaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggt 285  Q
    |||||| | ||||||| |||| ||||||||||||||||||||||||||||||| | ||||||||| |||||||||    
T  27920336 caaagagttttcaccttgatcatcattagtgttactagtttcctgccagattttatcatcaacatattgagtggt 27920262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 302
Target Start/End: Complemental strand, 27776634 - 27776525
Alignment:
Q  193 aagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggc 292  Q
    ||||||| ||||  |||||||||| | ||||||| |||  |||||||| ||||||||||||||| || |||||||||||||||||||||| ||  |||||    
T  27776634 aagaaaataaaattgatccaaagagttttcaccttgatgatcattagtcttactagtttcctgcaagttttcaacatcaacatcttgagtagtaggaggc 27776535  T
Q  293 tttgttatgg 302  Q
    ||||||||||    
T  27776534 tttgttatgg 27776525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 28479797 - 28479937
Alignment:
Q  99 ttactttcatgacatcgtcatcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaaga 196  Q
    ||||||| ||||||   |||||||||| |||||||||| |||||||| || ||||||   |||| |||||||||| |||||| |||||||||| ||||||    
T  28479797 ttacttttatgacagaatcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttcaaaatgcaaagggtgatgaggtaaattaaga 28479896  T
Q  197 aaagaaaaccgatccaaagattcttcacctcgatcgtcatt 237  Q
    ||| ||||  |||||||||| ||||||||| |||| |||||    
T  28479897 aaataaaattgatccaaagagtcttcaccttgatcatcatt 28479937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 28508980 - 28509120
Alignment:
Q  99 ttactttcatgacatcgtcatcatttagagaaactgag-aaaaggtgagaaagaagaaggttaa-cttcaaaatgaaaagggcgatgaggtaacttaaga 196  Q
    ||||||| ||||||   |||||||||| |||||||||| |||||||| || ||||||   |||| |||||||||| |||||| |||||||||| ||||||    
T  28508980 ttacttttatgacagaatcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttcaaaatgcaaagggtgatgaggtaaattaaga 28509079  T
Q  197 aaagaaaaccgatccaaagattcttcacctcgatcgtcatt 237  Q
    ||| ||||  |||||||||| ||||||||| |||| |||||    
T  28509080 aaataaaattgatccaaagagtcttcaccttgatcatcatt 28509120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 27430824 - 27430870
Alignment:
Q  7 ctttgaaggacactgagattcaatagaagagggtcttgatttggaaa 53  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  27430824 ctttgaaggacactgagatgcaatataagagggtcttgatttggaaa 27430870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 26139089 - 26139185
Alignment:
Q  34 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaa 130  Q
    ||||||| | ||||| ||||||| ||| ||||| ||| | |||||||||| |||||||||||| ||||||||| ||| |   |||||||||||||||    
T  26139089 agagggtttagatttagaaactattatatcatcatccataggaaactgttcctcaatatttgagcttactttcttgaaagaatcatcatttagagaa 26139185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 28162891 - 28162792
Alignment:
Q  34 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaact 133  Q
    ||||||| | ||||||||||||| ||| |||||   ||| ||||| |||| |||||||||||| ||||||||| ||| | | ||||||||| ||||||||    
T  28162891 agagggtttagatttggaaactattatatcatcaatcttaggaaattgttcctcaatatttgagcttactttcttgaaagcatcatcatttcgagaaact 28162792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 26110202 - 26110303
Alignment:
Q  34 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaact 133  Q
    ||||||| | ||||||||||||| ||| ||||| ||||| | ||| |||| |||||||||||| ||||||||| ||| |   |||| |||||||||| ||    
T  26110202 agagggtttagatttggaaactattatatcatcatccttagaaaattgttcctcaatatttgagcttactttcttgaaagaatcatgatttagagaacct 26110301  T
Q  134 ga 135  Q
    ||    
T  26110302 ga 26110303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 26127278 - 26127383
Alignment:
Q  30 tagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagaga 129  Q
    ||||||||||| | ||||||||||||| ||| | ||| |||||  |||| |||| |||||||||||| ||||||||| ||| |   |||| |||||||||    
T  26127278 tagaagagggtttagatttggaaactattatattatcatccttatgaaattgttcctcaatatttgagcttactttcttgaaagaatcatgatttagaga 26127377  T
Q  130 aactga 135  Q
    | ||||    
T  26127378 acctga 26127383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 28056612 - 28056547
Alignment:
Q  237 tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 302  Q
    |||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28056612 tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28056547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 28067037 - 28066972
Alignment:
Q  237 tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 302  Q
    |||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28067037 tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28066972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 18076983 - 18077027
Alignment:
Q  8 tttgaaggacactgagattcaatagaagagggtcttgatttggaa 52  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||    
T  18076983 tttgaaggaaactgagatgcaatagaagagggtcgtgatttggaa 18077027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 27920505 - 27920463
Alignment:
Q  7 ctttgaaggacactgagattcaatagaagagggtcttgatttg 49  Q
    |||||||||| |||||||| |||||||||||| ||||||||||    
T  27920505 ctttgaaggaaactgagatgcaatagaagaggttcttgatttg 27920463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 26177328 - 26177433
Alignment:
Q  30 tagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagaga 129  Q
    ||||||||||| | ||||||||||||| ||| | ||| |||||  |||| |||| ||||||| |||| ||||||||| ||| |   |||| |||||||||    
T  26177328 tagaagagggtttagatttggaaactattatattatcatccttatgaaattgttcctcaataattgagcttactttcttgaaagaatcatgatttagaga 26177427  T
Q  130 aactga 135  Q
    | ||||    
T  26177428 acctga 26177433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 26204494 - 26204566
Alignment:
Q  34 agagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttc 106  Q
    ||||||| | ||||||||||||| ||| ||| | || |||| ||| | || ||||||||||||||||||||||    
T  26204494 agagggtttagatttggaaactattatatcaccatcattggtaaaattttcctcaatatttgatcttactttc 26204566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 107 - 303
Target Start/End: Complemental strand, 19277 - 19079
Alignment:
Q  107 atgacatcgtcatcatttagagaaactgag-aaaaggtgagaaagaagaaggttaactt-caaaatgaaaagggcgatgaggtaacttaagaaaagaaaa 204  Q
    |||||| |||| |||||||||||||||||  |||||||| || ||||||  ||||| || |||||||||||||| |||||||||||||||||||| || |    
T  19277 atgacaacgtcgtcatttagagaaactgaacaaaaggtgtgagagaagagagttaaatttcaaaatgaaaagggtgatgaggtaacttaagaaaataata 19178  T
Q  205 ccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggc 303  Q
      |||||||||| ||||||||| |||| ||| || ||||||||||||||||| || | | ||||||||||||||||||||| |||||||||||||||||    
T  19177 ttgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggtaagaggctttgttatggc 19079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 2038 - 1819
Alignment:
Q  7 ctttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttc 106  Q
    ||||||||||||||||||| |||||| | || |  ||||||||||||||||||||||||| |||||  |||| || | |||||||| ||| |||||||||    
T  2038 ctttgaaggacactgagatacaatagtacagagctttgatttggaaactaatatttcatcatccttaagaaattgatcctcaatatctgagcttactttc 1939  T
Q  107 atgacatcgtcatcatttagagaaactg-agaaaaggtgagaaagaagaaggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaac 205  Q
    |||| | | |||||||||| | |||||| | |||| ||| |||| ||| ||   ||||||||||||||||||| |||| ||||||||||||||| |||||    
T  1938 atgatagcatcatcatttaaaaaaactgaacaaaatgtgggaaataag-agtcaaacttcaaaatgaaaagggtgatgtggtaacttaagaaaataaaac 1840  T
Q  206 cgatccaaagattcttcacct 226  Q
    ||||  ||| | |||||||||    
T  1839 cgattgaaatactcttcacct 1819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 621 - 530
Alignment:
Q  44 gatttggaaactaatatttcatcttccttgggaaactgttgctcaatatttgatcttactttcatgacatcgtcatcatttagagaaactga 135  Q
    |||| ||||| || ||||||||| ||||| |||||||||| |||||||||| | ||||||||||||||| | || |||||||||| ||||||    
T  621 gattgggaaattattatttcatcatccttaggaaactgttcctcaatatttaagcttactttcatgacaacatcgtcatttagaggaactga 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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