View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_low_25 (Length: 334)
Name: NF18668_low_25
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 37959883 - 37960203
Alignment:
| Q |
1 |
aagttgatgttgtgaaacattgtaaatgtgttatttaattaacggtgttataacacattgaatgtggtagcattttctcaattagatgaaaacttgaaat |
100 |
Q |
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| T |
37959883 |
aagttgatgttgtgaaacattgtaaatgtgttatttaattaacggtgttataacacattgaatgtggtagcattttctcaattagatgaaaacttgaaat |
37959982 |
T |
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| Q |
101 |
atcgtactacattttaagacaatttgttaggctcaactatgcaaatgatccatgtaaatagagttcactttaatgtttgccaaacttattgaacaacaaa |
200 |
Q |
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| T |
37959983 |
atcgtactacattttaagacaatttgttaggctcaattatgcaaacgatccatgtaaatagagttcactttaatgtttgccaaacttattgaacaacaaa |
37960082 |
T |
|
| Q |
201 |
ttggtaacaaaagaaaaaggaaattggaatgttttacctaaattgagaaaacaaactcattataagtttccttagttcattcacatgctacaaatattat |
300 |
Q |
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| T |
37960083 |
ttggtaacaaaagaaaaaggaaattggaatgttttgcctaaattgagaaaacaaactcattataagtttccttagttcattcacatgctacaaatattat |
37960182 |
T |
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| Q |
301 |
caagttgttcttgaaagatgt |
321 |
Q |
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| T |
37960183 |
caagttgttcttgaaagatgt |
37960203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 37954316 - 37954394
Alignment:
| Q |
244 |
tgagaaaacaaactcattataagtttcctt-agttcattcacatgctacaaatattatcaagttgttcttgaaagatgt |
321 |
Q |
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| T |
37954316 |
tgagagaacaaactcattagaagtttcctttagttcattcacatgctagaaatattatcaagctgttcttgaaagatgt |
37954394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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