View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_low_29 (Length: 321)
Name: NF18668_low_29
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 34646980 - 34646676
Alignment:
| Q |
1 |
caacaatcaagtttaatttattccactaagtagaatcggctaattaccttgacgctagcctaggtgttcgagaagacgtcaatatataaactataaacta |
100 |
Q |
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| T |
34646980 |
caacaatcaagtttaatttattccactaagtagaatcggctaattaccttgacgctagcctaggtgttcgagaagacggcaatatataaactataaacta |
34646881 |
T |
|
| Q |
101 |
ctaaaaaacaagttgaattaacaacgaaaattagaaacgggaaaatataaaattcatctctacaagttggaaactctaaaattgaagatcagatccattt |
200 |
Q |
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| T |
34646880 |
ctaaaaaacaagttgaattaacaacgaaaattagaaacgggaaaatataaaattcatctctacaagttggaaactctaaaattgaagatcagatccattt |
34646781 |
T |
|
| Q |
201 |
tttccatcactaattcttgttgataattcaacttttgctagtagttgaaatagagagaagaaatcaaatgagtagtaatacttgtattaaatatatccat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34646780 |
tttccatcactaattcttgttgataattcaacttttgctagtagttgaaatagagagaagaaatcaaatgagtagtaatacttgtattaaatatattcat |
34646681 |
T |
|
| Q |
301 |
gactt |
305 |
Q |
| |
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||||| |
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| T |
34646680 |
gactt |
34646676 |
T |
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