View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18668_low_36 (Length: 264)

Name: NF18668_low_36
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18668_low_36
NF18668_low_36
[»] chr8 (2 HSPs)
chr8 (7-264)||(34134617-34134860)
chr8 (78-128)||(38806003-38806052)
[»] chr2 (6 HSPs)
chr2 (77-131)||(36599221-36599275)
chr2 (77-128)||(45497468-45497519)
chr2 (77-128)||(45505210-45505261)
chr2 (78-128)||(35171464-35171514)
chr2 (77-128)||(36597724-36597775)
chr2 (78-128)||(45547872-45547922)
[»] chr3 (3 HSPs)
chr3 (78-128)||(19551232-19551282)
chr3 (78-142)||(45214149-45214213)
chr3 (78-131)||(24149913-24149966)
[»] chr1 (3 HSPs)
chr1 (78-142)||(28038400-28038464)
chr1 (78-128)||(26881895-26881945)
chr1 (103-136)||(45273551-45273584)
[»] scaffold0202 (1 HSPs)
scaffold0202 (78-128)||(15704-15754)
[»] chr7 (2 HSPs)
chr7 (78-128)||(35089176-35089226)
chr7 (78-142)||(27417713-27417777)
[»] chr4 (1 HSPs)
chr4 (78-128)||(8583080-8583130)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 34134860 - 34134617
Alignment:
Q  7 caaacattttcattgacttttttgaaatcctaaaaatccatcaaatactttgaaattttataaatatcccaattgtaaaaagtcttttaaacataatctt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||             
T  34134860 caaacattttcattgacttttttgaaatcctaaaaatccatcaaatactttcaaattttataaatatcccaattgtaaaaagtcttttaaa--------- 34134770  T
Q  107 ttaaaatctcataaaatcaatataagctcacaaagtgttaacatcttaaaaagaaaatctttaccaaaataatcttttaaaattgcaatcaaaatgcacc 206  Q
         |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34134769 -----atctcataaaatcaatataatctcacaaagtgttaacatcttaaaaaaaaaatctttaccaaaataatcttttaaaattgcaatcaaaatgcacc 34134675  T
Q  207 cattaattaaattattattagtataatttattatatcaatcattttgataacatagat 264  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34134674 cattaattaaattattattagtataatttattatatcactcattttgataacatagat 34134617  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 38806052 - 38806003
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaata 128  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||||||    
T  38806052 attgtaaaaagtcttttaaaaa-aatcttttaaaatctcatagaatcaata 38806003  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 36599275 - 36599221
Alignment:
Q  77 aattgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaatataa 131  Q
    ||||||||||||||||||||| | |||||||||||||  ||||||||||||||||    
T  36599275 aattgtaaaaagtcttttaaaaaaaatcttttaaaataccataaaatcaatataa 36599221  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 45497468 - 45497519
Alignment:
Q  77 aattgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaata 128  Q
    ||||||||||||||||||||| | | ||||||||||||||| ||||||||||    
T  45497468 aattgtaaaaagtcttttaaataaagtcttttaaaatctcaaaaaatcaata 45497519  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 45505210 - 45505261
Alignment:
Q  77 aattgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaata 128  Q
    ||||||||||||||||||||| | | ||||||||||||||| ||||||||||    
T  45505210 aattgtaaaaagtcttttaaataaagtcttttaaaatctcaaaaaatcaata 45505261  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 35171514 - 35171464
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaata 128  Q
    |||||||||||||||||||| | | ||||||||||||||| ||||||||||    
T  35171514 attgtaaaaagtcttttaaaaaaagtcttttaaaatctcacaaaatcaata 35171464  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 36597775 - 36597724
Alignment:
Q  77 aattgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaata 128  Q
    ||||||||||||||||||||| |   ||||||||||||||| ||||||||||    
T  36597775 aattgtaaaaagtcttttaaaaaatgtcttttaaaatctcacaaaatcaata 36597724  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 45547872 - 45547922
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaata 128  Q
    |||||||||||||||| ||| | | ||||||||||||||| ||||||||||    
T  45547872 attgtaaaaagtctttcaaaaaaagtcttttaaaatctcacaaaatcaata 45547922  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 19551282 - 19551232
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaata 128  Q
    |||||||||||||||||||| | |||||||||||||| || ||||||||||    
T  19551282 attgtaaaaagtcttttaaaaaaaatcttttaaaatcccacaaaatcaata 19551232  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 45214213 - 45214149
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaatataagctcacaaagt 142  Q
    ||||||||||| |||||||| | | ||||||||||||||| |||||||||| || | ||||||||    
T  45214213 attgtaaaaagccttttaaataaagtcttttaaaatctcacaaaatcaatacaatcacacaaagt 45214149  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 24149966 - 24149913
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaatataa 131  Q
    |||||||||||||||| ||| | | |||||||||||| || |||||||||||||    
T  24149966 attgtaaaaagtctttcaaaaaaagtcttttaaaatcccacaaaatcaatataa 24149913  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 28038464 - 28038400
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaatataagctcacaaagt 142  Q
    ||||||||||||| |||||| | | ||||||||||||  |||||||||||||||  |||||||||    
T  28038464 attgtaaaaagtcatttaaaaaaagtcttttaaaatcctataaaatcaatataatttcacaaagt 28038400  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 26881945 - 26881895
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaata 128  Q
    |||||||||||||||| ||| | |||||||||||||| || ||||||||||    
T  26881945 attgtaaaaagtctttcaaaaaaaatcttttaaaatcccacaaaatcaata 26881895  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 45273551 - 45273584
Alignment:
Q  103 tcttttaaaatctcataaaatcaatataagctca 136  Q
    ||||||||||||||||||||||||||||| ||||    
T  45273551 tcttttaaaatctcataaaatcaatataatctca 45273584  T

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Target: scaffold0202 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 15754 - 15704
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaata 128  Q
    ||||| |||||||||||||| | | ||||||||||||||| ||||||||||    
T  15754 attgtgaaaagtcttttaaataaagtcttttaaaatctcaaaaaatcaata 15704  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 35089226 - 35089176
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaata 128  Q
    |||||||||||||||| ||| | | ||||||||||||||| ||||||||||    
T  35089226 attgtaaaaagtctttcaaaaaaagtcttttaaaatctcacaaaatcaata 35089176  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 27417777 - 27417713
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaatataagctcacaaagt 142  Q
    |||||||||||||||| ||| | | |||||||||||| || |||||||||| || || |||||||    
T  27417777 attgtaaaaagtctttgaaaaaaagtcttttaaaatcccacaaaatcaatacaatctaacaaagt 27417713  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 8583130 - 8583080
Alignment:
Q  78 attgtaaaaagtcttttaaacataatcttttaaaatctcataaaatcaata 128  Q
    |||||||||||||||| ||| | |||||||||||||| || ||||||||||    
T  8583130 attgtaaaaagtctttcaaaaaaaatcttttaaaatcccacaaaatcaata 8583080  T

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