View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18668_low_38 (Length: 262)
Name: NF18668_low_38
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 40409688 - 40409946
Alignment:
| Q |
1 |
tgtattagccaatgattgccccataatggtgtcctagatatatatatgatttggtttattatatggttgatttgatttatcggagactggtgctgtacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40409688 |
tgtattagccaatgattgccccataatggtgtcctagatatatgtatgatttggtttattatatggttgatttgatttatcggagactggtgctgtacct |
40409787 |
T |
|
| Q |
101 |
tgtgtcatgcatcaactttgtggtggaccttgcttagctcattctttaattcaatcatatcttactcttcctactttttattgtcttttctcctgttaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40409788 |
tgtgtcatgcatcaactttgtggtggaccttgcttagctcattctttaattcaatcatatcttactcttcctactttttattgtcttttctcctgttaat |
40409887 |
T |
|
| Q |
201 |
aacgattaatcatcagttcagttgccaattgccaaaaaattatcttaatacgtgttctt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40409888 |
aacgattaatcatcagttcagttgccaattgccaaaaaattatcttaatacgtgttctt |
40409946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 4709956 - 4709880
Alignment:
| Q |
78 |
tatcggagactggtgctgtaccttgtgtcatgcatcaactttgtggtggaccttgcttagctcattctttaattcaa |
154 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||| ||||| ||||| |
|
|
| T |
4709956 |
tatcggtgactggtgctataccttgtgtcatgcatcaactttatggaaggccttgcttagctcatgctttagttcaa |
4709880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 4844712 - 4844680
Alignment:
| Q |
90 |
gtgctgtaccttgtgtcatgcatcaactttgtg |
122 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
4844712 |
gtgctataccttgtgtcatgcatcaactttgtg |
4844680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University