View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_low_39 (Length: 259)
Name: NF18668_low_39
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 55127962 - 55127721
Alignment:
| Q |
1 |
ttcatacaaggaaatcaatacagtactgcgaattaaactatccagatactttaattccattcatgagcacgtagatattcatattaatccacgttttata |
100 |
Q |
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| T |
55127962 |
ttcatacaag-aaatcaatacagtactgcgaattaaactatccagatactttaattccattcatgagcacgtagatattcatattaatccacgttttata |
55127864 |
T |
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| Q |
101 |
caaggaaggacttaactataatttgttgctttgagaaaagagaatcacatcatgtgggaaacatcttcatggatcaattcttaaacaacaaaaaagcgtt |
200 |
Q |
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| T |
55127863 |
caaggaaggacttaactacaatttgttgctttgagaaaagagaatcacatcatgtgggaaacatcttcatggatcaattcttaaacaacaaaaaagcgtt |
55127764 |
T |
|
| Q |
201 |
caaagaatgaaactatgtttctttagttgtttgtcgttatctt |
243 |
Q |
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| T |
55127763 |
caaagaatgaaactatgtttctttagttgtttgtcgttatctt |
55127721 |
T |
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