View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18668_low_4 (Length: 637)
Name: NF18668_low_4
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 36513895 - 36513575
Alignment:
| Q |
19 |
ataactaaagatttggggtttgtggagttagtttgctgctcggattctcttgtttatatcaatctcataaacggacgtcatgagaaatatcacatctata |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
36513895 |
ataactaaagatttagggtttgtggagttagtttgctgctcggattctcttgtttatatcaatctcataaacggacgtcaggagaaatatcacgtctata |
36513796 |
T |
|
| Q |
119 |
ccgttcttatacaagacgtaaa---------tcatcaaattaatgtcacaatttggcacactctcagagaagggaaccgatgcgccgattcttcgcaaaa |
209 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
36513795 |
ccgttcttatacaagacataaaagagccacttcatcaaattaatgttacaatttggcacactctcagagaaggaaaccggtgcgccgattcttcgcaaaa |
36513696 |
T |
|
| Q |
210 |
ctttgagtttcttcatatgttgatctcctcattcacgcttctcccctagttgggctgctcaactttcttagaatgacgctaatggaacctctttttagag |
309 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36513695 |
ctttgagtttcttcagatgttgatctcctcattcacgcttctcccctagctgggctgctcaactttattagaatgacgctaatggaacctctttttagag |
36513596 |
T |
|
| Q |
310 |
attagctagcttttgttaggc |
330 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36513595 |
attagctagcttttgttaggc |
36513575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 360 - 620
Target Start/End: Complemental strand, 36513546 - 36513286
Alignment:
| Q |
360 |
cttgttgtctcatttttcattgtaactnnnnnnngaataatataaaatgtttattcgaaattagtcaaatgtattagctccacaaaaacacatttgaagt |
459 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36513546 |
cttgttgtctcatttttcattgtaactaaaaaaagaataatataaaatgtttattcgaaattagtcaaatgtattagcttcacaaaaacacatttgaagt |
36513447 |
T |
|
| Q |
460 |
agcgatatttattgttgaagcatttaaaaccaatttcacatcaaccttagagtcgtaatcaatacaaacatgcaagtttcatagtaattgtgtgcacaca |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36513446 |
agcgatatttattgttgaagcatttaaaaccaatttcacatcaaccttagagtcgtaatcaatacaaacatgcaagtttcatagtaattgtgtgcacaca |
36513347 |
T |
|
| Q |
560 |
tcaagaacaaggaaaaccaaacaataatatcttgctatggtcttaggaccacacctccaca |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36513346 |
tcaagaacaaggaaaaccaaacaataatatcttgctatggtcttaggaccacacctccaca |
36513286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 6313248 - 6313346
Alignment:
| Q |
37 |
tttgtggagttagtttgctgctcggattctcttgtttatatcaatctcataaacggacgtcatgagaaatatcacatctataccgttcttatacaagac |
135 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| || || |||| |||||| ||||| ||||||||||||||| |
|
|
| T |
6313248 |
tttgtggagttagtttgctactcggattctcttgtttgtatcaatctcatcaacggccgccaagagatatatcatgtctatgttgttcttatacaagac |
6313346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 31010266 - 31010203
Alignment:
| Q |
29 |
atttggggtttgtggagttagtttgctgctcggattctcttgtttatatcaatctcataaacgg |
92 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
31010266 |
atttgggttttgtggagttagtttgctactcggattctcttgtttgcatcaagctcatcaacgg |
31010203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 48318223 - 48318118
Alignment:
| Q |
29 |
atttggggtttgtggagttagtttgctgctcggattctcttgtttatatcaatctcataaacggacgtcatgagaaatatcacatctataccgttcttat |
128 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||||||||| | ||| |||||||||||| ||||| || | ||||| |||||| ||||| |||||||| |
|
|
| T |
48318223 |
atttgggttttatggagttagtttgctactcggattctc-tctttgtatcaatctcatcaacgggcgcctggagaagtatcacgtctatgttgttcttat |
48318125 |
T |
|
| Q |
129 |
acaagac |
135 |
Q |
| |
|
||||||| |
|
|
| T |
48318124 |
acaagac |
48318118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 43777568 - 43777701
Alignment:
| Q |
150 |
taatgtcacaatttggcacactctcagagaagggaaccgatgcgccgattcttcgcaaaactttga-gtttcttcatatgttgatctcctcattcacgct |
248 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||| | ||| ||||| || | ||| ||||| | |||||| ||||||||||||||||||| ||| |
|
|
| T |
43777568 |
taatgtcataatttgtcacactctcagaaaagggaactggtgcatcgattttttgacaaagtttgaagcttcttcggatgttgatctcctcattcatgct |
43777667 |
T |
|
| Q |
249 |
tctcccctagttgggctgctcaactttcttagaa |
282 |
Q |
| |
|
||| || | ||||||||||||| ||||||||| |
|
|
| T |
43777668 |
tctttcccaactgggctgctcaaccttcttagaa |
43777701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University