View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_low_41 (Length: 248)
Name: NF18668_low_41
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 11433702 - 11433922
Alignment:
| Q |
10 |
catcatcaccaattgccaccccttctctaccaccaaccaccgtctcatcaccaccctacgaccgtgtgaaagccttgaaagaattcgacgaaacaaaatc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11433702 |
catcatcaccaattgccaccccttctctaccaccaaccaccgtctcatcaccaccctacgaccgtgtgaaagccttgaaagaattcgacgaaacaaaatc |
11433801 |
T |
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| Q |
110 |
cggcgtaaaaggcttaatcgactccggaatcaaaaccattccatctttcttcatccatccacctgaaaccctatctgacctcactccacaatcagatttt |
209 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11433802 |
cggcgtaaaaggcataatcgactccggaatcaaaaccattccatctttcttcatccatccacctgaaaccctatctgacctcactccacgatcagatttc |
11433901 |
T |
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| Q |
210 |
ccccaatcggaaatccccaca |
230 |
Q |
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|||||| || ||||||||||| |
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| T |
11433902 |
ccccaaccgaaaatccccaca |
11433922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 11423077 - 11423297
Alignment:
| Q |
10 |
catcatcaccaattgccaccccttctctaccaccaaccaccgtctcatcaccaccctacgaccgtgtgaaagccttgaaagaattcgacgaaacaaaatc |
109 |
Q |
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||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||| || | |||||| ||||||||||||||||||||||||| |
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| T |
11423077 |
catcatcaccaattgccactccttcaccaccaccaaccaccgtctcatcaccaccgtacgatcgaatcaaagccgtgaaagaattcgacgaaacaaaatc |
11423176 |
T |
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| Q |
110 |
cggcgtaaaaggcttaatcgactccggaatcaaaaccattccatctttcttcatccatccacctgaaaccctatctgacctcactccacaatcagatttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
11423177 |
cggcgtaaaaggcttaatcgactccggaatcaaaaccattccatctttcttcatccatccacctgaaatcctatctgacctcactccacgatcagatttc |
11423276 |
T |
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| Q |
210 |
ccccaatcggaaatccccaca |
230 |
Q |
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|||||| |||||||||||||| |
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| T |
11423277 |
ccccaaccggaaatccccaca |
11423297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 11427880 - 11428044
Alignment:
| Q |
66 |
tacgaccgtgtgaaagccttgaaagaattcgacgaaacaaaatccggcgtaaaaggcttaatcgactccggaatcaaaaccattccatctttcttcatcc |
165 |
Q |
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|||||||||| ||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || | |
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| T |
11427880 |
tacgaccgtgcgaaagatgtgaaagaattcgatgaaacaaaatccgacgtaaaaggcttaatcgacttcggaatcaaaaccattccatctttctttattc |
11427979 |
T |
|
| Q |
166 |
atccacctgaaaccctatctgacctcactccacaatcagattttccccaatcggaaatccccaca |
230 |
Q |
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| T |
11427980 |
acccacccgaaactctatccgatctcactccacgatcagatttcccccaaccagaaattcccaca |
11428044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 11390429 - 11390258
Alignment:
| Q |
58 |
caccaccctacgaccgtgtgaaagccttgaaagaattcgacgaaacaaaatccggcgtaaaaggcttaatcgactccggaatcaaaaccattccatcttt |
157 |
Q |
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||||||| || |||||||| ||||| ||||||||||||| ||||| |||| || ||||||||| ||| |||||||||||||||||||| ||||| || |
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| T |
11390429 |
caccaccttatgaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcatt |
11390330 |
T |
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| Q |
158 |
cttcatccatccacctgaaaccctatctgacctcactccacaatcagattttccccaatcggaaatccccac |
229 |
Q |
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||||||||||||||| ||||| ||||| ||||||||||||| ||||||||| |||||| ||||||| ||||| |
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| T |
11390329 |
cttcatccatccacccgaaactctatccgacctcactccacgatcagatttcccccaaccggaaattcccac |
11390258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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