View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_low_42 (Length: 241)
Name: NF18668_low_42
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53215417 - 53215195
Alignment:
| Q |
1 |
aatggagaaaattagcaatagtcattttaaatgttatgttcggattatggaatctaaacaaaagtcatttttacacgtcttgattttaaattccaaatgt |
100 |
Q |
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| T |
53215417 |
aatggagaaaattagcaatagtcattttaaatgttatgttcggattatggaatctaaacaaaagtcatttttacacgtcttgattttaaactccaaacgt |
53215318 |
T |
|
| Q |
101 |
tctatttatatgtttcgaacctctgttgtgcctgaatgcaatttcataattgttttcctcatcacttgttaggcacaagagcgg-ttcaaaacatgtaaa |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
53215317 |
tctatttatatgtttcgaacctctattgtgcctgaatgcaatttcataattgttttcttcatcatttgttaggcacaagagcggtttcaaaacatgtaaa |
53215218 |
T |
|
| Q |
200 |
aagggtgtttggattataaagtc |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
53215217 |
aagggtgtttggattataaagtc |
53215195 |
T |
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