View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_low_45 (Length: 236)
Name: NF18668_low_45
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_45 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 41103367 - 41103587
Alignment:
| Q |
16 |
gttcttctccggcgaatcgaaaatataattgcagagtattctctcgccgtgaaacagagtgttaacggcgactttgacggcgtttaaccaacacttgatt |
115 |
Q |
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| T |
41103367 |
gttcttctccggcgaatcgaaaatataattgcagagtattctctcgccgtgaaacagagtgttaacggcgactttgacggcgtttaaccaacacttcatt |
41103466 |
T |
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| Q |
116 |
ttatattcaagcatttcccagtccattttctgaatttgagaaaaactcaaattctcaactccgagattgtacaaagcttcatccataatagattttctca |
215 |
Q |
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| T |
41103467 |
ttatattcaagcatttcccagtccattttctgaatttgagaaaaactcaaattctcaactccgagattgtacaaagcttcatccataatagattttctca |
41103566 |
T |
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| Q |
216 |
cgattaagtaaatattcacac |
236 |
Q |
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| T |
41103567 |
cgattaagtaaatattcacac |
41103587 |
T |
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