View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_low_46 (Length: 232)
Name: NF18668_low_46
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 29784099 - 29783916
Alignment:
| Q |
30 |
atgaacgaataaaagcatgcttagaaaataaaaaccttgtaataaaatttgttataaagatattagaacatgtccgttatttaaaaaacagtggggccat |
129 |
Q |
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| T |
29784099 |
atgaacgaataaaagcatgcttagaaaataaaaaccttgtaattaaatttgttataaagatattagaatatgtcccttatttaaaaa-cagtggggccat |
29784001 |
T |
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| Q |
130 |
taacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaat |
214 |
Q |
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| T |
29784000 |
ttacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaat |
29783916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 29788106 - 29787923
Alignment:
| Q |
30 |
atgaacgaataaaagcatgcttagaaaataaaaaccttgtaataaaatttgttataaagatattagaacatgtccgttatttaaaaaacagtggggccat |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| |
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| T |
29788106 |
atgaacgaataaaagcatgcttagaaaataaaaaccttgtaattaaatttgttataaagatattagaatatgtcccttatttaaaaa-cagtggggccat |
29788008 |
T |
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| Q |
130 |
taacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaat |
214 |
Q |
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| T |
29788007 |
ttacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaat |
29787923 |
T |
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