View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18668_low_49 (Length: 216)
Name: NF18668_low_49
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 5330664 - 5330482
Alignment:
| Q |
17 |
atattataatactatttttgaaagtccatttgtaatatcaagaatcacaacataactttgtaaccgaacctatacttgaaaactttttatacaattaata |
116 |
Q |
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| T |
5330664 |
atattataatactatttttgaaagtccaattataatatcaagaatcacaacataactttgtaaccgaacctatacttgaaaactttttatacaattaata |
5330565 |
T |
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| Q |
117 |
ttaactttatatcactgacacgtgagatcaaacatatgttatcatattcatgaccaacaacacaactataatacatatagttg |
199 |
Q |
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| T |
5330564 |
ttaactttatatcactgacacgtgagatcaaacatatgttatcatattcatgaccaacaacacaactataatacatatagttg |
5330482 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 20434636 - 20434586
Alignment:
| Q |
17 |
atattataatactatttttgaaagtccatttgtaatatcaagaatcacaac |
67 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
20434636 |
atattataatactatttttgaaagtccaattataatatcaagaatcacaac |
20434586 |
T |
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