View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18668_low_5 (Length: 610)

Name: NF18668_low_5
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18668_low_5
NF18668_low_5
[»] chr3 (2 HSPs)
chr3 (270-594)||(40227809-40228133)
chr3 (177-245)||(16253552-16253620)
[»] chr5 (5 HSPs)
chr5 (115-235)||(17219684-17219804)
chr5 (88-208)||(8095278-8095398)
chr5 (178-246)||(31930568-31930636)
chr5 (159-244)||(30667410-30667495)
chr5 (182-246)||(831145-831209)
[»] chr2 (5 HSPs)
chr2 (113-246)||(24399361-24399494)
chr2 (180-246)||(6204289-6204355)
chr2 (197-246)||(37911535-37911584)
chr2 (178-246)||(24398716-24398784)
chr2 (178-246)||(30517122-30517190)
[»] chr6 (4 HSPs)
chr6 (171-243)||(29201386-29201458)
chr6 (181-246)||(29200705-29200770)
chr6 (88-137)||(29201336-29201385)
chr6 (178-246)||(30322384-30322452)
[»] chr4 (5 HSPs)
chr4 (170-235)||(32648375-32648440)
chr4 (178-244)||(30057834-30057900)
chr4 (178-242)||(30057125-30057189)
chr4 (178-225)||(32647706-32647753)
chr4 (178-246)||(42559824-42559892)
[»] chr1 (2 HSPs)
chr1 (159-243)||(52380986-52381070)
chr1 (177-246)||(27789362-27789431)
[»] chr8 (1 HSPs)
chr8 (171-244)||(37188532-37188605)
[»] chr7 (1 HSPs)
chr7 (197-246)||(33670229-33670278)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 270 - 594
Target Start/End: Complemental strand, 40228133 - 40227809
Alignment:
Q  270 taaatttgttaatgattagtttttatgcactacaaaaagagtgtcatttttataaactaattctaaaagtatttccaccgactaacaaaattttacgaaa 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40228133 taaatttgttaatgattagtttttatgcactacaaaaagagtgtcatttttataaactaattctaaaagtatttccaccgactaacaaaattttatgaaa 40228034  T
Q  370 gttcactttcaactcaaaaatccgttaaaaaggctaaagaatgatctcaattgtatgaatattacaccaattatttcaatcaataatcaaagtatgattt 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40228033 gttcactttcaactcaaaaatccgttaaaaaggctaaagaatgatctcaattgtatgaatattacaccaattatttcaatcaataatcaaagtatcattt 40227934  T
Q  470 gttaaaaggtaatgggtaactctttaagaatgatgggtagactagtctgatttctttaagaaaaaagtactcttaagaatgcatcatcatcaattcttnn 569  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  40227933 gttaaaaggtaatgggtaactctttaagaatgatgggtaggctagtctgatttctttaagaaaaaagtactcttaagaatgcatcatcatcaattcttta 40227834  T
Q  570 nnnnnntgcatcatgatgaacatcc 594  Q
          |||||||||||||||||||    
T  40227833 aaaaaatgcatcatgatgaacatcc 40227809  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 16253620 - 16253552
Alignment:
Q  177 tttttaatctgatggctcctattcattcttaccattatcaaata-aaatattcattctcatgtgatatgc 245  Q
    ||||||||||||||||  | ||| |||||||||||| ||| ||| |||||| ||||||||||||||||||    
T  16253620 tttttaatctgatggccacaatttattcttaccattctcatatataaatat-cattctcatgtgatatgc 16253552  T

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Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 17219684 - 17219804
Alignment:
Q  115 tggattgagtggtagtggacacatgtgatgtttaatttgactcatttaatcacaaccatctatttttaatctgatggctcctattcattcttaccattat 214  Q
    ||||| ||||||| ||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |    
T  17219684 tggatagagtggttgtggacacatgtggtgtttaattggactcatttaatctcaaccatatatttttaatctgatggctcctattcattcctaccattct 17219783  T
Q  215 caaataaaatattcattctca 235  Q
    || |||||||| |||||||||    
T  17219784 cacataaaatactcattctca 17219804  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 8095398 - 8095278
Alignment:
Q  88 agatgaaatgtgggtgtgcagaacagatggattgagtggtagtggacacatgtgatgtttaatttgactcatttaatcacaaccatctatttttaatctg 187  Q
    |||||||| ||||||||||||||  ||||||| ||||||| ||||||||||||| |||||||   ||||||||||||| |||||||||||||||||||||    
T  8095398 agatgaaacgtgggtgtgcagaattgatggatagagtggttgtggacacatgtggtgtttaaaaggactcatttaatctcaaccatctatttttaatctg 8095299  T
Q  188 atggctcctattcattcttac 208  Q
    |||| |   ||||||||||||    
T  8095298 atggttgtaattcattcttac 8095278  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 31930636 - 31930568
Alignment:
Q  178 ttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatgcc 246  Q
    |||||||||||||||| | ||| ||||| |||||| ||| |||| ||| ||||||||||||||||||||    
T  31930636 ttttaatctgatggctgcaatttattctcaccattctcacataagatactcattctcatgtgatatgcc 31930568  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 30667410 - 30667495
Alignment:
Q  159 tttaatcacaaccatctatttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatg 244  Q
    ||||||| ||| |||| |||||| |||| |||| |  ||  |||||| |||||| ||| ||||||||||||||||||| |||||||    
T  30667410 tttaatctcaatcatccatttttgatctaatggttaataaacattctcaccattctcatataaaatattcattctcatatgatatg 30667495  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 831145 - 831209
Alignment:
Q  182 aatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatgcc 246  Q
    ||||||||||||   ||| |||||||  ||| ||| ||||||||| |||||||||||||||||||    
T  831145 aatctgatggctgtaatttattcttattattctcacataaaatatacattctcatgtgatatgcc 831209  T

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Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 113 - 246
Target Start/End: Original strand, 24399361 - 24399494
Alignment:
Q  113 gatggattgagtggtagtggacacatgtgatgtttaatttgactcatttaatcacaaccatctatttttaatctgatggctcctattcattcttaccatt 212  Q
    ||||||| ||||||| ||||| ||||||| ||||||| | ||||||||||||| ||||||| ||||||||||| |||||||   ||||||||||||||||    
T  24399361 gatggatagagtggttgtggatacatgtggtgtttaaatggactcatttaatctcaaccatttatttttaatccgatggctgtaattcattcttaccatt 24399460  T
Q  213 atcaaataaaatattcattctcatgtgatatgcc 246  Q
     ||| ||||  || ||||||||||||||||||||    
T  24399461 ctcacataagttactcattctcatgtgatatgcc 24399494  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 6204355 - 6204289
Alignment:
Q  180 ttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatgcc 246  Q
    ||||||| |||||| | ||||||||| |||||| ||| |||| ||| ||||||||||||||||||||    
T  6204355 ttaatcttatggctgcaattcattctcaccattctcacataagatactcattctcatgtgatatgcc 6204289  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 37911584 - 37911535
Alignment:
Q  197 attcattcttaccattatcaaataaaatattcattctcatgtgatatgcc 246  Q
    ||||||||||| |||| ||| |||| | ||||||||||||||||||||||    
T  37911584 attcattcttatcattctcatataagaaattcattctcatgtgatatgcc 37911535  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 24398784 - 24398716
Alignment:
Q  178 ttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatgcc 246  Q
    |||||||||||||| |   |||||||||||||||| ||| ||||  || |||||||||| |||||||||    
T  24398784 ttttaatctgatggttgtaattcattcttaccattctcacataagttactcattctcatatgatatgcc 24398716  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 30517190 - 30517122
Alignment:
Q  178 ttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatgcc 246  Q
    |||||||| ||||||| | ||| ||||| | |||| ||| ||||| || ||||||||||||||||||||    
T  30517190 ttttaatccgatggctgcaatttattctcatcattctcacataaattactcattctcatgtgatatgcc 30517122  T

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Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 29201386 - 29201458
Alignment:
Q  171 catctatttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatat 243  Q
    |||||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||    
T  29201386 catctatttttaatttgatggctcctattcattcttagcattctcacataaaatattcattctcatgtgatat 29201458  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 29200770 - 29200705
Alignment:
Q  181 taatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatgcc 246  Q
    |||| ||| ||||||||||||||| ||||||| ||| |||||||| |||||||||  |||||||||    
T  29200770 taatttgacggctcctattcattcctaccattctcacataaaatactcattctcacttgatatgcc 29200705  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 29201336 - 29201385
Alignment:
Q  88 agatgaaatgtgggtgtgcagaacagatggattgagtggtagtggacaca 137  Q
    |||||||||||||||||||||||| ||||||| ||||| || ||||||||    
T  29201336 agatgaaatgtgggtgtgcagaactgatggatagagtgataatggacaca 29201385  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 30322452 - 30322384
Alignment:
Q  178 ttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatgcc 246  Q
    ||||||| || ||||| | ||||||||| |||||| ||| |||| ||| ||||||||||||||||||||    
T  30322452 ttttaatatgttggctgcaattcattctcaccattctcacataagatactcattctcatgtgatatgcc 30322384  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 32648375 - 32648440
Alignment:
Q  170 ccatctatttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctca 235  Q
    ||||||||||||||||||||||||||||||||||| ||  ||| ||| ||||||||  ||||||||    
T  32648375 ccatctatttttaatctgatggctcctattcattcctattattctcacataaaatacccattctca 32648440  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 30057834 - 30057900
Alignment:
Q  178 ttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatg 244  Q
    ||||||||| |||||||||||| ||||||| |||| ||| ||| |||  ||||||||||||||||||    
T  30057834 ttttaatctaatggctcctatttattcttatcattctcacatataattgtcattctcatgtgatatg 30057900  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 30057189 - 30057125
Alignment:
Q  178 ttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgata 242  Q
    ||||||||| ||||||| |||||||||||| |||| ||| ||| |||  ||||||||||||||||    
T  30057189 ttttaatctaatggctcatattcattcttatcattctcacatataattgtcattctcatgtgata 30057125  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 32647753 - 32647706
Alignment:
Q  178 ttttaatctgatggctcctattcattcttaccattatcaaataaaata 225  Q
    ||||||||||||||||||||||||||| || |||| ||| ||||||||    
T  32647753 ttttaatctgatggctcctattcattcctatcattctcacataaaata 32647706  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 42559892 - 42559824
Alignment:
Q  178 ttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatgcc 246  Q
    |||||||| || |||| | ||| |||||||||||| ||| ||||  || ||||||||||||||||||||    
T  42559892 ttttaatccgacggctgcaatttattcttaccattctcacataagttagtcattctcatgtgatatgcc 42559824  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 52381070 - 52380986
Alignment:
Q  159 tttaatcacaaccatctatttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatat 243  Q
    ||||||| ||||||   ||||||||| ||||||||| ||||||||| || |||| ||| ||| |||  |||||||||||||||||    
T  52381070 tttaatctcaaccacacatttttaatatgatggctcatattcattcctatcattctcatatataattgtcattctcatgtgatat 52380986  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 27789362 - 27789431
Alignment:
Q  177 tttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatgcc 246  Q
    ||||||||| ||||||| | ||| ||||| |||||| ||| ||||  || ||||||||||||||||||||    
T  27789362 tttttaatccgatggctgcaatttattctcaccattctcacataagttactcattctcatgtgatatgcc 27789431  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 37188605 - 37188532
Alignment:
Q  171 catctatttttaatctgatggctcctattcattcttaccattatcaaataaaatattcattctcatgtgatatg 244  Q
    ||||||||||||||||||||| ||||||| |||  || |||| ||| |||| ||  ||||| ||||||||||||    
T  37188605 catctatttttaatctgatggttcctatttatttctatcattctcacataagatgctcattttcatgtgatatg 37188532  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 33670278 - 33670229
Alignment:
Q  197 attcattcttaccattatcaaataaaatattcattctcatgtgatatgcc 246  Q
    ||||||||||| |||||||| |||| |  |||||||||||||||||||||    
T  33670278 attcattcttatcattatcatataagaagttcattctcatgtgatatgcc 33670229  T

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