View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18668_low_6 (Length: 609)
Name: NF18668_low_6
Description: NF18668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18668_low_6 |
 | |
|
| [»] scaffold0187 (7 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 37911567 - 37911841
Alignment:
| Q |
17 |
aaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtat |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
37911567 |
aaacaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtat |
37911666 |
T |
|
| Q |
108 |
tattatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37911667 |
tattatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacag |
37911766 |
T |
|
| Q |
208 |
cattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37911767 |
cattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggata |
37911841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 37881626 - 37881902
Alignment:
| Q |
21 |
aacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtattatt |
111 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
37881626 |
aacagtcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattatt |
37881725 |
T |
|
| Q |
112 |
atgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37881726 |
atgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcatt |
37881825 |
T |
|
| Q |
212 |
cattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggatacgaaca |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
37881826 |
cattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggatacgaaca |
37881902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 37855398 - 37855668
Alignment:
| Q |
21 |
aacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtattatt |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37855398 |
aacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattatt |
37855497 |
T |
|
| Q |
112 |
atgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37855498 |
atgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcatt |
37855597 |
T |
|
| Q |
212 |
cattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37855598 |
cattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggata |
37855668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 37867586 - 37867856
Alignment:
| Q |
21 |
aacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtattatt |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37867586 |
aacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattatt |
37867685 |
T |
|
| Q |
112 |
atgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37867686 |
atgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcatt |
37867785 |
T |
|
| Q |
212 |
cattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37867786 |
cattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggata |
37867856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 326 - 594
Target Start/End: Original strand, 37881940 - 37882205
Alignment:
| Q |
326 |
tctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtctataatt |
424 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37881940 |
tctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatctttcaagtttattctttcttcatgtctataatt |
37882039 |
T |
|
| Q |
425 |
taattctaatttagagaacagtgcaaagtattcggataaaatgttccactcgtaagttacnnnnnnnnnnnngctaaggaacttcagtaaagagatcata |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37882040 |
taattctaatttagagaacagtgcaaagtattcggataaagtgttccactcgtaagttac----ttttttttgctaaggaacttcagtaaagagatcata |
37882135 |
T |
|
| Q |
525 |
gttatcaaaacacagattgtggttgcgaacttgcagtggtggatgcagtcatgaccgctactattgtgat |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37882136 |
gttatcaaaacacagattgtggttgcgaacttgcagtggtggatgcagtcatgaccgctactattgtgat |
37882205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 37911890 - 37911958
Alignment:
| Q |
327 |
ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt |
395 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
37911890 |
ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatcttt |
37911958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 27510 - 27236
Alignment:
| Q |
17 |
aaacaacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtat |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27510 |
aaacaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtat |
27411 |
T |
|
| Q |
108 |
tattatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27410 |
tattatgataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacag |
27311 |
T |
|
| Q |
208 |
cattcattgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
27310 |
cattcattgctcaatacaagaaacgtatttctgaatctcaaattcattgccaaggtcaacctgatcagtaggata |
27236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 6844 - 6571
Alignment:
| Q |
21 |
aacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagggt------attattatg |
114 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
6844 |
aacaatcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaagaggtggaggagagtattatg |
6748 |
T |
|
| Q |
115 |
ataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcat |
214 |
Q |
| |
|
|| ||| | | |||| ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6747 |
atcatggtgcttatgctaacaaagtatggccaagtgatgaagatagaggaagttggggtgtagctgatcctgttattgacatgagagctacagcattcat |
6648 |
T |
|
| Q |
215 |
tgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggatacgaacaatc |
291 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
6647 |
tgctcaatacaagaaacgaatttctgaatctcaaattcattgccaagctcaacctgatcagtaggatacgaacaatc |
6571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 17172 - 16908
Alignment:
| Q |
21 |
aacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagggt------attattatg |
114 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
17172 |
aacaatcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaagaggtggaggagagtattatg |
17076 |
T |
|
| Q |
115 |
ataatgcttcatatgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcat |
214 |
Q |
| |
|
|| ||| | | |||| ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17075 |
atcatggtgcttatgctaacaaagtatggccaagtgatgaagatagaggaagttggggtgtagctgatcctgttattgacatgagagctacagcattcat |
16976 |
T |
|
| Q |
215 |
tgctcaatacaagaaacgtatttctgaatctcaaattcactggcaagctcaacctgatcagtaggata |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
16975 |
tgctcaatacaagaaacgtatttctgaatctcaaattcattgccaagctcaacctgatcagtaggata |
16908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 327 - 418
Target Start/End: Complemental strand, 6533 - 6441
Alignment:
| Q |
327 |
ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtct |
418 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||| |||| |
|
|
| T |
6533 |
ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataacctttcaagtttattctctcttcacgtct |
6441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 43 - 1
Alignment:
| Q |
17 |
aaacaacaatcagaggaagtcatctaaatcatcatcattcagg |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43 |
aaacaacaatcagaggaagtcatctaaatcatcatcattcagg |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Complemental strand, 6424 - 6387
Alignment:
| Q |
420 |
taatttaattctaatttagagaacagtgcaaagtattc |
457 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
6424 |
taatttagttttaatttagagaacagtgcaaagtattc |
6387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 418
Target Start/End: Complemental strand, 27170 - 27093
Alignment:
| Q |
343 |
tattgattatcatttgtgaactatgccaattaatg-taaatatgaataatcttt-aagtttattctttcttcatgtct |
418 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| | |||||||||||| ||| | ||||||||| |||| |||||| |
|
|
| T |
27170 |
tattgattatcatttgtaaactatgataattaatgtttaatatgaataatatttcatgtttattctctcttaatgtct |
27093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 9239818 - 9239670
Alignment:
| Q |
21 |
aacaatcagaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattatt |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
9239818 |
aacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcaataacaagcaaagaggaggaggagggtattatt |
9239719 |
T |
|
| Q |
112 |
atgataatgcttcatatgataacaaagtgtggccaagtgatgaagacag |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9239718 |
atgataatgcttcatatgataacaaagtgtggcctagtgatgaagacag |
9239670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 45759409 - 45759321
Alignment:
| Q |
141 |
tggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaa |
229 |
Q |
| |
|
||||| ||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
45759409 |
tggcctagtgatgaagacaaaggtacatggggggtagctgatcctgttattgacatgagagctacagcttttattgctcgatacaagaa |
45759321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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