View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_high_11 (Length: 347)
Name: NF18669_high_11
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 39943738 - 39944082
Alignment:
| Q |
1 |
ttttcataggcatagcaaggattcttggtgatggtctatgcaacgttgtaacacttcttggcacaactcttatagttttgtataaacaattgaagaaaaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||| |||| | | ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39943738 |
ttttcataggcatagcaatgattcttggtgatggtctatacaactttgtgaaagttcttggcacaactcttataggtttgtataaacaattgaagaaaaa |
39943837 |
T |
|
| Q |
101 |
agacaaaggagcacagtctgaggatccaaatgctcctctcccacctacactttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39943838 |
agacaaaggagcacagtctgaggatccaaatgctcctctcccacctacactttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatc |
39943937 |
T |
|
| Q |
201 |
ccctcctggtttgctatcgctggctatgtcataattgcaataatatcaatcattaccatcccccacattttccaccagctaaagtggtatcacatcattt |
300 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39943938 |
ccctcctggtttgctatcgcaggctatgtcataattgcaataatctcaatcattaccatcccccacattttccaccagctaaagtggtatcacatcattt |
39944037 |
T |
|
| Q |
301 |
gcatttacatcattgcacccgcactagccttttgcaatgcctatg |
345 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39944038 |
gtatttacatcattgcacccgcactagccttttgcaatgcctatg |
39944082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 28749158 - 28748814
Alignment:
| Q |
1 |
ttttcataggcatagcaaggattcttggtgatggtctatgcaacgttgtaacacttcttggcacaactcttatagttttgtataaacaattgaagaaaaa |
100 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||||| |||| |||| | | ||||||||||||||||| ||| |||| | ||||||| ||||||||| |
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| T |
28749158 |
ttttcatagccatagcaatgatccttggtgatggtctatacaactttgtgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaa |
28749059 |
T |
|
| Q |
101 |
agacaaaggagcacagtctgaggatccaaatgctcctctcccacctacactttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatc |
200 |
Q |
| |
|
||| | | ||||||| |||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
28749058 |
agatataagagcacaacctgatgatccaaatgctcctttcccacctacaatttcattcgacgacaagcgcagaaccgagatgttcctcaaagatcaaatc |
28748959 |
T |
|
| Q |
201 |
ccctcctggtttgctatcgctggctatgtcataattgcaataatatcaatcattaccatcccccacattttccaccagctaaagtggtatcacatcattt |
300 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
28748958 |
ccctcatggttcgcaatcgcaggctatgtcataattgcaataatctcaatcattactatcccacacattttccaccagctaaagtggtattacatcattt |
28748859 |
T |
|
| Q |
301 |
gcatttacatcattgcacccgcactagccttttgcaatgcctatg |
345 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28748858 |
gcatttacatcattgcacccgcattagccttttgcaatgcctatg |
28748814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 28753171 - 28752827
Alignment:
| Q |
1 |
ttttcataggcatagcaaggattcttggtgatggtctatgcaacgttgtaacacttcttggcacaactcttatagttttgtataaacaattgaagaaaaa |
100 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||||| |||| |||| | | ||||||||||||||||| ||| |||| | ||||||| ||||||||| |
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|
| T |
28753171 |
ttttcatagccatagcaatgatccttggtgatggtctatacaactttgtgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaa |
28753072 |
T |
|
| Q |
101 |
agacaaaggagcacagtctgaggatccaaatgctcctctcccacctacactttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatc |
200 |
Q |
| |
|
||| | | ||||||| |||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
28753071 |
agatataagagcacaacctgatgatccaaatgctcctttcccacctacaatttcattcgacgacaagcgcagaaccgagatgttcctcaaagatcaaatc |
28752972 |
T |
|
| Q |
201 |
ccctcctggtttgctatcgctggctatgtcataattgcaataatatcaatcattaccatcccccacattttccaccagctaaagtggtatcacatcattt |
300 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28752971 |
ccctcatggttcgcaatcgcaggctatgtcataattgcaataatctcaatcattactatcccacacattttccaccagctaaagtggtattacatcattt |
28752872 |
T |
|
| Q |
301 |
gcatttacatcattgcacccgcactagccttttgcaatgcctatg |
345 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
28752871 |
gcatttacatcattgcacccgcattagccttttgcaatgcctatg |
28752827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 28739207 - 28738865
Alignment:
| Q |
1 |
ttttcataggcatagcaaggattcttggtgatggtctatgcaacgttgtaacacttcttggcacaactcttatagttttgtataaacaattgaagaaaaa |
100 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||| |||| |||| | | ||||| ||||||||||||||| | |||| || |||| ||| ||||| |
|
|
| T |
28739207 |
ttttcatatccatagcaatgatccttggtgatggtctatacaactttgtgaaagttcttagcacaactcttataggtatgtacaagcaatggaacaaaaa |
28739108 |
T |
|
| Q |
101 |
agacaaaggagcacagtctgaggatccaaatgctcctctcccacctacactttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatc |
200 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
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| T |
28739107 |
agacaaaggagcagagtctaatgatccaaatgctcctctccaacctacactttcatttgacgacaagcgcagaaccgagatgttcctcaaagatcaaatc |
28739008 |
T |
|
| Q |
201 |
ccctcctggtttgctatcgctggctatgtcataattgcaataatatcaatcattaccatcccccacattttccaccagctaaagtggtatcacatcattt |
300 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| |||||||||||||| |||||| |
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|
| T |
28739007 |
ccctcctggttttctatcgcaggctatgtcataattggtataatttcaataattaccataccccacatttttcaccagataaagtggtatcacgtcattt |
28738908 |
T |
|
| Q |
301 |
gcatttacatcattgcacccgcactagccttttgcaatgccta |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28738907 |
tgatttacatcattgcacccgcactagccttttgcaatgccta |
28738865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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