View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_high_15 (Length: 320)
Name: NF18669_high_15
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 48 - 282
Target Start/End: Original strand, 33050063 - 33050290
Alignment:
| Q |
48 |
gataggaacaaagaaaaatccaaaggttttgcattagatcaagctttgcaagctcaatatacaaataaaaggaaatacaagaaaggaaagaattattgga |
147 |
Q |
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| T |
33050063 |
gataggaacaaagaaaaatccaaaggttctgcattagatcaagctttgcaagctcaatatacaaataaaaggaaatgcaagaaaggaaagaattattgga |
33050162 |
T |
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| Q |
148 |
atgataatgcttccaagaatgatgaaggttcaagtaaaaataaagaaagcttcgagaaagaatgagattcaatgatataatcttaaaaaatgggggcatt |
247 |
Q |
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| T |
33050163 |
atgataaagcttccaagaatgattaaggtt-------aaataaagaaagcttcgagaaagaaggagattcaatgatataatcttaaaaaatgggggcatt |
33050255 |
T |
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| Q |
248 |
atgtatctgaatgcaagtccaagaaagttccaagg |
282 |
Q |
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| T |
33050256 |
atgtatctgaattcaagtccaagaaagttccaagg |
33050290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 28451933 - 28451893
Alignment:
| Q |
240 |
ggggcattatgtatctgaatgcaagtccaagaaagttccaa |
280 |
Q |
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| T |
28451933 |
ggggcattatgcatctgaatgcaagtctaagaaagttccaa |
28451893 |
T |
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