View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18669_high_17 (Length: 284)

Name: NF18669_high_17
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18669_high_17
NF18669_high_17
[»] chr1 (7 HSPs)
chr1 (50-267)||(4887660-4887872)
chr1 (138-180)||(34721844-34721886)
chr1 (141-231)||(38797572-38797672)
chr1 (184-232)||(2099628-2099676)
chr1 (138-174)||(14334073-14334109)
chr1 (50-167)||(34387710-34387828)
chr1 (136-174)||(47411715-47411753)
[»] chr6 (1 HSPs)
chr6 (76-232)||(3482022-3482190)
[»] chr5 (5 HSPs)
chr5 (138-232)||(42858147-42858252)
chr5 (136-180)||(28110442-28110486)
chr5 (141-180)||(18851086-18851125)
chr5 (141-180)||(38845485-38845524)
chr5 (185-231)||(6813379-6813425)
[»] chr8 (7 HSPs)
chr8 (180-232)||(7244522-7244573)
chr8 (136-180)||(39753941-39753985)
chr8 (143-232)||(44141001-44141091)
chr8 (138-174)||(38868537-38868573)
chr8 (141-180)||(13384658-13384697)
chr8 (187-231)||(32101172-32101216)
chr8 (138-166)||(40769385-40769413)
[»] chr4 (5 HSPs)
chr4 (180-232)||(33456464-33456516)
chr4 (138-174)||(53913587-53913623)
chr4 (138-172)||(30357551-30357585)
chr4 (141-169)||(8604637-8604665)
chr4 (141-169)||(21691227-21691255)
[»] chr2 (3 HSPs)
chr2 (184-232)||(13912883-13912931)
chr2 (50-180)||(3352026-3352157)
chr2 (136-232)||(33019097-33019204)
[»] chr3 (3 HSPs)
chr3 (184-227)||(25359520-25359563)
chr3 (50-104)||(50321839-50321893)
chr3 (141-169)||(50550616-50550644)
[»] chr7 (1 HSPs)
chr7 (182-215)||(40431536-40431569)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 4887660 - 4887872
Alignment:
Q  50 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgatttataattgattt 149  Q
    |||||||||||||||||||||||||||| ||     ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  4887660 attctgatatgttttgttgttgtttagttga-----ttttgtctttagaattggtcaaatttaaagttaagatttgtaaccattgatttagaattgattt 4887754  T
Q  150 tcacacacaaatttatagttaaacttactttattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattcaacataatcaaattact 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4887755 tcacacacaaatttatagttaaacttactttattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattcaacgtaatcaaattact 4887854  T
Q  250 tttaaccaaaatcaaatc 267  Q
    ||||||||||||||||||    
T  4887855 tttaaccaaaatcaaatc 4887872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 34721886 - 34721844
Alignment:
Q  138 tataattgattttcacacacaaatttatagttaaacttacttt 180  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  34721886 tataattgattttcacacacaaatttatagttcgacttacttt 34721844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 38797672 - 38797572
Alignment:
Q  141 aattgattttcacacacaaatttatagttaaacttactt----------tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaat 230  Q
    ||||||||||||||||||||||||||||| |||| ||||          ||| |||||| |||||||||||  ||||| ||||||||| |||||||||||    
T  38797672 aattgattttcacacacaaatttatagttcaactcacttttaaataatgtatgcaaacataaatcacttttaatcaaatttatttttaaccaaaatcaat 38797573  T
Q  231 t 231  Q
    |    
T  38797572 t 38797572  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 2099676 - 2099628
Alignment:
Q  184 caaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 232  Q
    ||||||||||||||||||  ||||||||| ||||| |||||||||||||    
T  2099676 caaacacaaatcacttttactcaaaattacttttaaccaaaatcaattc 2099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 14334109 - 14334073
Alignment:
Q  138 tataattgattttcacacacaaatttatagttaaact 174  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14334109 tataattgattttcatacacaaatttatagttaaact 14334073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 34387828 - 34387710
Alignment:
Q  50 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgatt-tataattgatt 148  Q
    ||||||| || ||||||||||||| |||||||   || ||||||| | |||||||   | || |||||  || ||||| |  |||||| |||||||||||    
T  34387828 attctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgatt 34387729  T
Q  149 ttcacacacaaatttatag 167  Q
    |||||||||||||||||||    
T  34387728 ttcacacacaaatttatag 34387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 47411753 - 47411715
Alignment:
Q  136 tttataattgattttcacacacaaatttatagttaaact 174  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  47411753 tttataattgatttttacaaacaaatttatagttaaact 47411715  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 232
Target Start/End: Original strand, 3482022 - 3482190
Alignment:
Q  76 gtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgattt-ataattgattttcacacacaaatttatagttaaact 174  Q
    |||||||  ||| |||||||||||||||| | | || ||||||||||||| | || ||||||| | ||||||||||||||||||| ||||||||| ||||    
T  3482022 gtagaattgattctgtctttagaattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaact 3482121  T
Q  175 tactt-----------tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 232  Q
    |||||           ||||||||||||||||||||||  | | ||| ||||||| |||||||||||||    
T  3482122 tacttttacatgaatgtattcaaacacaaatcacttttattgagaatcatttttaaccaaaatcaattc 3482190  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 42858147 - 42858252
Alignment:
Q  138 tataattgattttcacacacaaatttatagttaaacttac-----------tttattcaaacacaaatcacttttggtcaaaattatttttagccaaaat 226  Q
    |||||||||||||||||||||||||||||||| |||| ||           |||||||||||||| ||||||||| |||| ||| ||||||| |||||||    
T  42858147 tataattgattttcacacacaaatttatagttcaactcacttttacatgaatttattcaaacacagatcacttttagtcagaatcatttttaaccaaaat 42858246  T
Q  227 caattc 232  Q
    ||||||    
T  42858247 caattc 42858252  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 28110486 - 28110442
Alignment:
Q  136 tttataattgattttcacacacaaatttatagttaaacttacttt 180  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||    
T  28110486 tttagaattgattttcacacacaaatttatagttgaactcacttt 28110442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 18851125 - 18851086
Alignment:
Q  141 aattgattttcacacacaaatttatagttaaacttacttt 180  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  18851125 aattgattttcacacacatatttatagttaaactcacttt 18851086  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 180
Target Start/End: Original strand, 38845485 - 38845524
Alignment:
Q  141 aattgattttcacacacaaatttatagttaaacttacttt 180  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  38845485 aattgattttcacacacaaatatatagttaaactcacttt 38845524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 6813379 - 6813425
Alignment:
Q  185 aaacacaaatcacttttggtcaaaattatttttagccaaaatcaatt 231  Q
    ||||||| | ||||||||||||||||||||||||  |||||||||||    
T  6813379 aaacacataccacttttggtcaaaattatttttaatcaaaatcaatt 6813425  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 7244573 - 7244522
Alignment:
Q  180 tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 232  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  7244573 tattcaaacacaaatcacttttggtc-aagttatttttaaccaaaatcaattc 7244522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 39753941 - 39753985
Alignment:
Q  136 tttataattgattttcacacacaaatttatagttaaacttacttt 180  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||    
T  39753941 tttataattgtttttcacacacaaatttatagtttaacttacttt 39753985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 44141091 - 44141001
Alignment:
Q  143 ttgattttcacacacaaatttatagttaaacttacttt-attcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 232  Q
    |||||||||||||| || ||||||||| ||||  |||| || ||||||||| |||||||| |||| ||| | ||||| |||||||||||||    
T  44141091 ttgattttcacacataattttatagttcaactcgcttttatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattc 44141001  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 38868537 - 38868573
Alignment:
Q  138 tataattgattttcacacacaaatttatagttaaact 174  Q
    |||||||||||||||||||||||||||||||| ||||    
T  38868537 tataattgattttcacacacaaatttatagttcaact 38868573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 13384697 - 13384658
Alignment:
Q  141 aattgattttcacacacaaatttatagttaaacttacttt 180  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  13384697 aattgattttcacacacaaatttatagttcaactcacttt 13384658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 32101172 - 32101216
Alignment:
Q  187 acacaaatcacttttggtcaaaattatttttagccaaaatcaatt 231  Q
    |||||||||||||||| ||  ||||||||||| ||||||||||||    
T  32101172 acacaaatcacttttgatcgtaattatttttaaccaaaatcaatt 32101216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 40769413 - 40769385
Alignment:
Q  138 tataattgattttcacacacaaatttata 166  Q
    |||||||||||||||||||||||||||||    
T  40769413 tataattgattttcacacacaaatttata 40769385  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 33456464 - 33456516
Alignment:
Q  180 tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 232  Q
    |||||||||| |||| ||||||||||||||||| ||||| |||||||||||||    
T  33456464 tattcaaacataaataacttttggtcaaaattacttttaaccaaaatcaattc 33456516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 53913623 - 53913587
Alignment:
Q  138 tataattgattttcacacacaaatttatagttaaact 174  Q
    ||||||||||||||||||| |||||||||||||||||    
T  53913623 tataattgattttcacacataaatttatagttaaact 53913587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 30357551 - 30357585
Alignment:
Q  138 tataattgattttcacacacaaatttatagttaaa 172  Q
    ||||||||||||| |||||||||||||||||||||    
T  30357551 tataattgatttttacacacaaatttatagttaaa 30357585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 8604665 - 8604637
Alignment:
Q  141 aattgattttcacacacaaatttatagtt 169  Q
    |||||||||||||||||||||||||||||    
T  8604665 aattgattttcacacacaaatttatagtt 8604637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 21691255 - 21691227
Alignment:
Q  141 aattgattttcacacacaaatttatagtt 169  Q
    |||||||||||||||||||||||||||||    
T  21691255 aattgattttcacacacaaatttatagtt 21691227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 13912883 - 13912931
Alignment:
Q  184 caaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 232  Q
    |||||||||||||||||| |||| ||||| ||||| |||||||||||||    
T  13912883 caaacacaaatcactttttgtcagaattaattttaaccaaaatcaattc 13912931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 180
Target Start/End: Original strand, 3352026 - 3352157
Alignment:
Q  50 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgatt-tataattgatt 148  Q
    ||||||| || ||||||||||||| |||||||   || ||||||| | |||||||   | || |||||  || ||||| |  |||||| |||||||||||    
T  3352026 attctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgatt 3352125  T
Q  149 ttcacacacaaatttatagttaaacttacttt 180  Q
    |||||||||||||||||  || ||||||||||    
T  3352126 ttcacacacaaatttatgtttcaacttacttt 3352157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 33019204 - 33019097
Alignment:
Q  136 tttataattgattttcacacacaaatttatagttaaacttacttt-----------attcaaacacaaatcacttttggtcaaaattatttttagccaaa 224  Q
    |||| |||||||||||||||| |||||||||||| |||| |||||           || |||||||||||||||||| |||| ||| | ||||| |||||    
T  33019204 tttagaattgattttcacacataaatttatagttcaactcacttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaa 33019105  T
Q  225 atcaattc 232  Q
    ||||||||    
T  33019104 atcaattc 33019097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 25359563 - 25359520
Alignment:
Q  184 caaacacaaatcacttttggtcaaaattatttttagccaaaatc 227  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||    
T  25359563 caaacacaaatcactttttgtcagaattatttttaaccaaaatc 25359520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 50321893 - 50321839
Alignment:
Q  50 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgat 104  Q
    ||||||| |||||| |||||| ||||||||||| ||||||||||  |||||||||    
T  50321893 attctgacatgtttggttgttttttagtagaattaattttgtctcaagaattgat 50321839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Original strand, 50550616 - 50550644
Alignment:
Q  141 aattgattttcacacacaaatttatagtt 169  Q
    |||||||||||||||||||||||||||||    
T  50550616 aattgattttcacacacaaatttatagtt 50550644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 40431569 - 40431536
Alignment:
Q  182 ttcaaacacaaatcacttttggtcaaaattattt 215  Q
    |||||||||||||||||||| |||||||||||||    
T  40431569 ttcaaacacaaatcacttttagtcaaaattattt 40431536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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