View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_high_18 (Length: 281)
Name: NF18669_high_18
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 7884589 - 7884327
Alignment:
| Q |
6 |
agggtttaacgcaagtagttggtgtacaaaatgtgcggatatcgtaaatcttgagatattgagttccattcatactcataaaaacatagccataannnnn |
105 |
Q |
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| T |
7884589 |
agggtttaacgcaagtagttggtgtacaaagtgtgcggatatcgtaaatcttgagatattgagttccattcatactcataaaaacatagccataattttt |
7884490 |
T |
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| Q |
106 |
nnggttaaaacaaaata---------------cctctcttggtacaagagtcttagggatgaccctacaacaataggaaaattgatcataatcacaaata |
190 |
Q |
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| T |
7884489 |
ttggttaaaacaaaataaaattgaacaaaatacctctcttggtacaagagtcttagggatgaccctacaacaataggaaaattgatcataatcacaaata |
7884390 |
T |
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| Q |
191 |
aagaagca-agaaaagggtggaggtggattagttaccctatgacttggcttcctccatcaaac |
252 |
Q |
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| T |
7884389 |
aagaagcagagaaaagggtggaggtggattagttaccctatgatttggcttcctccatcaaac |
7884327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 7900127 - 7900010
Alignment:
| Q |
136 |
aagagtcttagggatgaccctacaacaataggaaaattgatcataatcacaaataaagaagca-agaaaagggtggaggtggattagttaccctatgact |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
7900127 |
aagagtcttagggatgaccctacaacaataggaaaattgatcataatcacaaataaagaagcagagaaaagggtgggggtggattagttaccctatgact |
7900028 |
T |
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| Q |
235 |
tggcttcctccatcaaac |
252 |
Q |
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|||| ||||||||||||| |
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| T |
7900027 |
tggcgtcctccatcaaac |
7900010 |
T |
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