View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_high_20 (Length: 266)
Name: NF18669_high_20
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 65 - 233
Target Start/End: Complemental strand, 1128245 - 1128077
Alignment:
| Q |
65 |
acctccttcacatctcatatgcaagagtatatgcacatttatttataatacataaaagaaaccgtgcacatattttctttattagtaatattttcattcc |
164 |
Q |
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| T |
1128245 |
acctccttcgcatctcatatgcaagagtatatgcacatttatttataatacataaaagaaaccgtgcacatattttctttattagtaatattttcattcc |
1128146 |
T |
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| Q |
165 |
ttcttctgccacttgactctccaagaagggaaaaccttttcaaaactcgcataatacgtatataggcct |
233 |
Q |
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| T |
1128145 |
tttttctgccacttgactctccaagaagggaaaaccttttcaaaactcgcataatacgtatataggcct |
1128077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 1128277 - 1128245
Alignment:
| Q |
19 |
gatgattaacatgaaaccaacaaaactcataaa |
51 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1128277 |
gatgattaacatgaaaccaacaaaactcataaa |
1128245 |
T |
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