View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_high_22 (Length: 248)
Name: NF18669_high_22
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 38484966 - 38484748
Alignment:
| Q |
18 |
agaaaacacggccaacgaataaccctaacattccaagcattgtttggcagctccagcagctcaacctctttatcagaaatgatatcttcctctctaaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484966 |
agaaaacacggccaacgaataaccctaacattccaagcattgtttggcagctccagcagctcaacctctttatcagaaatgatatcttcctctctaaagg |
38484867 |
T |
|
| Q |
118 |
acataattatctcgttccataacaaagcaaatttcttggcatcagcctggttagaatcgagcttcttaaaaggatgaccaagtccataccttagcttcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484866 |
acataattatctcgttccataacaaagcaaatttcttggcatcagcctggttagaatcgagcttcttaaaaggatgaccaagtccataccttagcttcat |
38484767 |
T |
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| Q |
218 |
cctatgaattgcatcccta |
236 |
Q |
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||||||||||||||||||| |
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| T |
38484766 |
cctatgaattgcatcccta |
38484748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 30119362 - 30119147
Alignment:
| Q |
18 |
agaaaacacggccaacgaataaccctaacattccaagcattgtttggcagctccagcagctcaacctctttatcagaaatgatatcttcctctctaaagg |
117 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||| || | ||||||||||||||||||||||||| | ||||| || ||||| ||||| ||||| | |
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| T |
30119362 |
agaaaacatggccaacgaataacccgaacattccaagagttctgtggcagctccagcagctcaacctctctgtcagagataatatcctcctccctaaaag |
30119263 |
T |
|
| Q |
118 |
acataattatctcgttccataacaaagcaaatttcttggcatcagcctggttagaatcgagcttcttaaaaggatgaccaagtccataccttagcttcat |
217 |
Q |
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||| ||||||||||||||||| ||||||||| || ||||| ||| |||||||||| ||||||||| | | || ||||||| |||||||| ||||||| |
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| T |
30119262 |
acaaaattatctcgttccatatcaaagcaaacttgttggcctcaacctggttagactcgagcttcctgtagggccgaccaagcccatacctgagcttcaa |
30119163 |
T |
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| Q |
218 |
cctatgaattgcatcc |
233 |
Q |
| |
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|||||| || |||||| |
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| T |
30119162 |
cctatggatggcatcc |
30119147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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