View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18669_high_23 (Length: 239)
Name: NF18669_high_23
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_high_23 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0013 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 93070 - 93274
Alignment:
| Q |
16 |
atgaaggaaggagccaaaatttaggtggcattgggttgcttccactccaatcaaaaataccaagtatctataggtaaaagatttattcaaattagaaaca |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
93070 |
atgaaggaaggagccaaaattcaggtggcattgggttgcttccactccaatcaaaaagaccaagtatctataggtaaaagatatattcaaattagaaaca |
93169 |
T |
|
| Q |
116 |
tattatatgttagtttgcagacatttttatattgattgaatnnnnnnnnncggtacctaccgaaagccatgtttttccccatgaaggtatatgtgttaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
93170 |
tattatatgttagtttgcagacatttttatattgattgaataaaaaaaaacggtacctaccgaaagccatgtttttccccatgaaggtatatgtgttaca |
93269 |
T |
|
| Q |
216 |
ccacc |
220 |
Q |
| |
|
||||| |
|
|
| T |
93270 |
ccacc |
93274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 103296 - 103195
Alignment:
| Q |
16 |
atgaaggaaggagccaaaatttaggtggcattgggttgcttccactccaatcaaaaataccaagtatctataggtaaaagatttattcaaattagaaaca |
115 |
Q |
| |
|
|||||||||||| |||||| | ||| ||||||||||||||||| ||||||||| | |||||||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
103296 |
atgaaggaaggatccaaaactcagggggcattgggttgcttcccaaccaatcaaagagaccaagtatctataggtaaatgatacattcaaattagtaaca |
103197 |
T |
|
| Q |
116 |
ta |
117 |
Q |
| |
|
|| |
|
|
| T |
103196 |
ta |
103195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 162334 - 162281
Alignment:
| Q |
167 |
ggtacctaccgaaagccatgtttttccccatgaaggtatatgtgttacaccacc |
220 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
162334 |
ggtagctaccgaaagccaagttttcccccatgaaggtatacgtgttacaccacc |
162281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 103148 - 103101
Alignment:
| Q |
173 |
taccgaaagccatgtttttccccatgaaggtatatgtgttacaccacc |
220 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
103148 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccacc |
103101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 162567 - 162463
Alignment:
| Q |
16 |
atgaaggaaggagccaaaatttaggtggcattgggttgcttccactccaatcaaaaataccaagtatctataggtaaaagat---ttattcaaattagaa |
112 |
Q |
| |
|
|||||||||||| |||||| | ||| ||||||||||||||||| ||||||| | | |||||||||||||| ||||| ||| |||||||||| || | |
|
|
| T |
162567 |
atgaaggaaggatccaaaactcagggggcattgggttgcttcccgaccaatcatatacaccaagtatctatacgtaaaggatacattattcaaataagta |
162468 |
T |
|
| Q |
113 |
acata |
117 |
Q |
| |
|
||||| |
|
|
| T |
162467 |
acata |
162463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 13052048 - 13052001
Alignment:
| Q |
173 |
taccgaaagccatgtttttccccatgaaggtatatgtgttacaccacc |
220 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13052048 |
taccgaaagccaagtttttccccatgaaggtatatgcgttacaccacc |
13052001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 12138115 - 12138162
Alignment:
| Q |
173 |
taccgaaagccatgtttttccccatgaaggtatatgtgttacaccacc |
220 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
12138115 |
taccgaaagccaagtttttccccatgaaggtatctgtgtcacaccacc |
12138162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 12137987 - 12138030
Alignment:
| Q |
47 |
tgggttgcttccactccaatcaaaaataccaagtatctataggt |
90 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||||||||||| |
|
|
| T |
12137987 |
tgggttggttccactccaatcaaatacaccaagtatctataggt |
12138030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 5670686 - 5670754
Alignment:
| Q |
16 |
atgaaggaaggagccaaaatttaggtggcattgggttgcttccactccaatcaaaaataccaagtatct |
84 |
Q |
| |
|
|||| ||||| | |||||| | ||| ||||||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
5670686 |
atgagggaagcatccaaaactcagggggcattgggttgcttgcacgccaatcaaagataccaagtatct |
5670754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 5692434 - 5692502
Alignment:
| Q |
16 |
atgaaggaaggagccaaaatttaggtggcattgggttgcttccactccaatcaaaaataccaagtatct |
84 |
Q |
| |
|
|||| ||||| | |||||| | ||| ||||||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
5692434 |
atgagggaagcatccaaaactcaggaggcattgggttgcttgcacgccaatcaaagataccaagtatct |
5692502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 5722774 - 5722842
Alignment:
| Q |
16 |
atgaaggaaggagccaaaatttaggtggcattgggttgcttccactccaatcaaaaataccaagtatct |
84 |
Q |
| |
|
|||| ||||| | |||||| | ||| ||||||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
5722774 |
atgagggaagcatccaaaactcaggaggcattgggttgcttgcacgccaatcaaagataccaagtatct |
5722842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University