View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18669_high_3 (Length: 525)
Name: NF18669_high_3
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 151 - 469
Target Start/End: Original strand, 9489185 - 9489503
Alignment:
| Q |
151 |
acatatgattatgatattcccataatttaatcttcttgtgagacatttcctcctcatttagctgggtataatcaaatagttgacaaaatttcaatctcat |
250 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9489185 |
acatatgattatgatatttccataatttaatcttcttgtaagacatttcctcctcatttagctgggtataatcaaataattgacaaaatttcaatctcat |
9489284 |
T |
|
| Q |
251 |
ttttagtctccaaaatagtgatatcctttgattccaatgataaccataaatccaaacaaggtcctcaaaagtattatatatattcctaaattttatacca |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9489285 |
ttttagtctccaaaatagtgatatcctttgattccaatgataaccataaatccaaacaaggtcctcaaaagtattatatatattcctatattttatacca |
9489384 |
T |
|
| Q |
351 |
atgtcaaaatgagatatcaagttttgttgtagctctttttcttccaattttatccttaaatatgtaggtgttgtcgctatagtccctaaatttatcaaaa |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9489385 |
atgtcaaaatgagatatcaagttttgttgtggctctttttcttccaattttatccttaaatatgtaggtgttgtcgctatagtctctaaatttatcaaaa |
9489484 |
T |
|
| Q |
451 |
tagtattgaatgtattttt |
469 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
9489485 |
taatattgaatgtattttt |
9489503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University