View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18669_high_6 (Length: 492)
Name: NF18669_high_6
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18669_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 12 - 478
Target Start/End: Original strand, 30496356 - 30496822
Alignment:
| Q |
12 |
atcaataatcattcaagatttagaagtttgagaaaaggatgtagaactcaatttggccaaataagtaagataaggaaaatccaccttctgtgcaagacct |
111 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30496356 |
atcaataatcattcaagatttagaagtttgcgaaaaggatgtagaactcaatttggccaaataagtaagataaggaaaatccaccttctgtgcaagacct |
30496455 |
T |
|
| Q |
112 |
atctgattgaagttgtcatacagatctatcgatttacgaagtctatcatagtccacctcgtcaacataaatttcatgcaaagcttcattaatagaaaaca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30496456 |
atctgattgaagttgtcatacagatctatcgatttacgaagtctatcgtagtccacctcgtcaacataaatttcatgcaaagcttcattaatagaaaaca |
30496555 |
T |
|
| Q |
212 |
cattgctgctttgaacttcaaccatgtacggccttatcaattggatgtggcctgcctaaaaatcagaaaattcgaccaacaagtataattattgcattaa |
311 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30496556 |
cattgctgctttgaacttcaaccatgtacggctttatcaatcggatatggcctgcctaaaaatcagaaaattcgagcaacaagtataattattgcattaa |
30496655 |
T |
|
| Q |
312 |
tcatttataactaattatttacataacctaataagattaaaattacagatattaggcaatagagtacaagaaatatagaccttctgcgctatttctataa |
411 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30496656 |
tcatttgcaactaattatttacataacctaataagattaaaattacagatattaggcaatagagtacaagaaatatagaccttctgcgctatttctacaa |
30496755 |
T |
|
| Q |
412 |
tacgggcatgttccacatgacgggcaagcacattaagaagatcatttataatatcaggatgttcttg |
478 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30496756 |
tacgggcatgttccacatgacgggcaagcacattaagaagatcatttataatatcaggatgttcttg |
30496822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 12 - 478
Target Start/End: Original strand, 30536699 - 30537165
Alignment:
| Q |
12 |
atcaataatcattcaagatttagaagtttgagaaaaggatgtagaactcaatttggccaaataagtaagataaggaaaatccaccttctgtgcaagacct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30536699 |
atcaataatcattcaagatttagaagtttgcgaaaaggatgtagaactcaatttggccaaataagtaagataaggaaaatccaccttctgtgcaagacct |
30536798 |
T |
|
| Q |
112 |
atctgattgaagttgtcatacagatctatcgatttacgaagtctatcatagtccacctcgtcaacataaatttcatgcaaagcttcattaatagaaaaca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30536799 |
atctgattgaagttgtcatacagatctatcgatttacgaagtctatcgtagtccacctcgtcaacataaatttcatgcaaagcttcattaatagaaaaca |
30536898 |
T |
|
| Q |
212 |
cattgctgctttgaacttcaaccatgtacggccttatcaattggatgtggcctgcctaaaaatcagaaaattcgaccaacaagtataattattgcattaa |
311 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30536899 |
cattgctgctttgaacttcaaccatgtacggctttatcaatcggatatggcctgcctaaaaatcagaaaattcgagcaacaagtataattattgcattaa |
30536998 |
T |
|
| Q |
312 |
tcatttataactaattatttacataacctaataagattaaaattacagatattaggcaatagagtacaagaaatatagaccttctgcgctatttctataa |
411 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30536999 |
tcatttgcaactaattatttacataacctaataagattaaaattacagatattaggcaatagagtacaagaaatatagaccttctgcgctatttctacaa |
30537098 |
T |
|
| Q |
412 |
tacgggcatgttccacatgacgggcaagcacattaagaagatcatttataatatcaggatgttcttg |
478 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30537099 |
tacgggcatgttccacatgacgggcaagcacattaagaagatcatttataatatcaggatgttcttg |
30537165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 102 - 273
Target Start/End: Complemental strand, 26032530 - 26032359
Alignment:
| Q |
102 |
tgcaagacctatctgattgaagttgtcatacagatctatcgatttacgaagtctatcatagtccacctcgtcaacataaatttcatgcaaagcttcatta |
201 |
Q |
| |
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||||||||||||||||| |||||||||| ||||||| | |||| |||||||| ||||||||| | || |||||||||||||||| | ||||||||| |
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| T |
26032530 |
tgcaagacctatctgatcaaagttgtcatgcagatctgttgattctcgaagtctgtcatagtcctcttcctcaacataaatttcatttagagcttcattg |
26032431 |
T |
|
| Q |
202 |
atagaaaacacattgctgctttgaacttcaaccatgtacggccttatcaattggatgtggcctgcctaaaaa |
273 |
Q |
| |
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| || | | ||||| | ||||| ||| | |||||||| ||| | ||||||| || ||||| ||||||||| |
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| T |
26032430 |
acagcagagacattattactttggactgcgaccatgtatggcttgatcaatttgagatggccagcctaaaaa |
26032359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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