View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18669_low_11 (Length: 355)

Name: NF18669_low_11
Description: NF18669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18669_low_11
NF18669_low_11
[»] chr4 (3 HSPs)
chr4 (246-339)||(172820-172913)
chr4 (143-208)||(172717-172782)
chr4 (13-76)||(172591-172654)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 172820 - 172913
Alignment:
Q  246 atgaaatcttaaatgccgatgcatttagatctatatacgtgatttcgaaatgtcgttattaaatcattactaattcaatttaatacgatctatc 339  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172820 atgaaatctaaaatgccgatgcatttagatctatatacgtgatttcgaaatgtcgttattaaatcattactaattcaatttaatacgatctatc 172913  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 172717 - 172782
Alignment:
Q  143 tgtttctgtttggtttggagtgagacgaagctaatttcactcacaagtgtaagcattattagatct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172717 tgtttctgtttggtttggagtgagacgaagctaatttcactcacaagtgtaagcattattagatct 172782  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 172591 - 172654
Alignment:
Q  13 aatattgacagcttaacaatatatgacacgttaattaatcaattaattaattaaactcaaaact 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172591 aatattgacagcttaacaatatatgacacgttaattaatcaattaattaattaaactcaaaact 172654  T

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